e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/lav.h src/hg/inc/lav.h index 5c9b253..6aacc01 100644 --- src/hg/inc/lav.h +++ src/hg/inc/lav.h @@ -1,33 +1,36 @@ /* lav.h -- common lav file reading routines */ +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef LAV_H #define LAV_H #include "common.h" #include "linefile.h" #include "axt.h" struct block /* A block of an alignment. */ { struct block *next; int qStart, qEnd; /* Query position. */ int tStart, tEnd; /* Target position. */ int percentId; /* Percentage identity. */ int score; }; void parseS(struct lineFile *lf, int *tSize, int *qSize); /* Parse s stanza and return tSize and qSize */ void parseH(struct lineFile *lf, char **tName, char **qName, boolean *isRc); /* Parse out H stanza */ void parseD(struct lineFile *lf, char **matrix, char **command, FILE *f); /* Parse d stanza and return matrix and blastz command line */ struct block *removeFrayedEnds(struct block *blockList); /* Remove zero length blocks at start and/or end to * work around blastz bug. */ #endif /* LAV_H */