e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/ld.h src/hg/inc/ld.h
index 5578351..ecb1e94 100644
--- src/hg/inc/ld.h
+++ src/hg/inc/ld.h
@@ -1,86 +1,89 @@
 /* ld.h was originally generated by the autoSql program, which also 
  * generated ld.c and ld.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef LD_H
 #define LD_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define LD_NUM_COLS 8
 
 struct ld
 /* Linkage Disequilibrium values from SNP genotypes */
     {
     struct ld *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* chromStart for reference marker */
     unsigned chromEnd;	/* chromEnd for last marker in list */
     char *name;	/* rsId at chromStart */
     unsigned score;	/* Number of markers with LD values */
     char *dprime;	/* Encoded lists of D' values */
     char *rsquared;	/* Encoded lists of r^2 values */
     char *lod;	/* Encoded lists of LOD values */
     };
 
 void ldStaticLoad(char **row, struct ld *ret);
 /* Load a row from ld table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct ld *ldLoad(char **row);
 /* Load a ld from row fetched with select * from ld
  * from database.  Dispose of this with ldFree(). */
 
 struct ld *ldLoadAll(char *fileName);
 /* Load all ld from whitespace-separated file.
  * Dispose of this with ldFreeList(). */
 
 struct ld *ldLoadAllByChar(char *fileName, char chopper);
 /* Load all ld from chopper separated file.
  * Dispose of this with ldFreeList(). */
 
 #define ldLoadAllByTab(a) ldLoadAllByChar(a, '\t');
 /* Load all ld from tab separated file.
  * Dispose of this with ldFreeList(). */
 
 struct ld *ldLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all ld from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with ldFreeList(). */
 
 void ldSaveToDb(struct sqlConnection *conn, struct ld *el, char *tableName, int updateSize);
 /* Save ld as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct ld *ldCommaIn(char **pS, struct ld *ret);
 /* Create a ld out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ld */
 
 void ldFree(struct ld **pEl);
 /* Free a single dynamically allocated ld such as created
  * with ldLoad(). */
 
 void ldFreeList(struct ld **pList);
 /* Free a list of dynamically allocated ld's */
 
 void ldOutput(struct ld *el, FILE *f, char sep, char lastSep);
 /* Print out ld.  Separate fields with sep. Follow last field with lastSep. */
 
 #define ldTabOut(el,f) ldOutput(el,f,'\t','\n');
 /* Print out ld as a line in a tab-separated file. */
 
 #define ldCommaOut(el,f) ldOutput(el,f,',',',');
 /* Print out ld as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* LD_H */