e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/llaInfo.h src/hg/inc/llaInfo.h index 2dcf619..3b2f496 100644 --- src/hg/inc/llaInfo.h +++ src/hg/inc/llaInfo.h @@ -1,94 +1,97 @@ /* llaInfo.h was originally generated by the autoSql program, which also * generated llaInfo.c and llaInfo.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2013 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef LLAINFO_H #define LLAINFO_H #ifndef JKSQL_H #include "jksql.h" #endif #define LLAINFO_NUM_COLS 20 struct llaInfo /* Extra information for a lowe lab array */ { struct llaInfo *next; /* Next in singly linked list. */ char *name; /* Name of primer pair */ char *type; /* Type of primer pair (ORF or intergenic) */ float SnTm; /* Sense primer annealing temp */ float SnGc; /* Sense primer annealing temp */ float SnSc; /* Sense primer self-complementarity score */ float Sn3pSc; /* Sense primer 3-prime self-complementarity score */ float AsnTm; /* Antisense primer annealing temp */ float AsnGc; /* Antisense primer annealing temp */ float AsnSc; /* Antisense primer self-complementarity score */ float Asn3pSc; /* Antisense primer 3-prime self-complementarity score */ unsigned prodLen; /* PCR product length */ unsigned ORFLen; /* Source ORF length */ float meltTm; /* PCR melting temperature */ float frcc; /* Forward+reverse primer cross complementarity */ float fr3pcc; /* 3-prime forward+reverse primer cross complementarity */ char *SnSeq; /* Sense primer sequence */ char *AsnSeq; /* Antisense primer sequence */ unsigned numCorrs; /* Number of correlations stored */ char **corrNames; /* Names of correlated genes */ float *corrs; /* Correlations */ }; struct llaInfo *llaInfoLoad(char **row); /* Load a llaInfo from row fetched with select * from llaInfo * from database. Dispose of this with llaInfoFree(). */ struct llaInfo *llaInfoLoadAll(char *fileName); /* Load all llaInfo from whitespace-separated file. * Dispose of this with llaInfoFreeList(). */ struct llaInfo *llaInfoLoadAllByChar(char *fileName, char chopper); /* Load all llaInfo from chopper separated file. * Dispose of this with llaInfoFreeList(). */ #define llaInfoLoadAllByTab(a) llaInfoLoadAllByChar(a, '\t'); /* Load all llaInfo from tab separated file. * Dispose of this with llaInfoFreeList(). */ struct llaInfo *llaInfoLoadByQuery(struct sqlConnection *conn, char *query); /* Load all llaInfo from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with llaInfoFreeList(). */ void llaInfoSaveToDb(struct sqlConnection *conn, struct llaInfo *el, char *tableName, int updateSize); /* Save llaInfo as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */ struct llaInfo *llaInfoCommaIn(char **pS, struct llaInfo *ret); /* Create a llaInfo out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new llaInfo */ void llaInfoFree(struct llaInfo **pEl); /* Free a single dynamically allocated llaInfo such as created * with llaInfoLoad(). */ void llaInfoFreeList(struct llaInfo **pList); /* Free a list of dynamically allocated llaInfo's */ void llaInfoOutput(struct llaInfo *el, FILE *f, char sep, char lastSep); /* Print out llaInfo. Separate fields with sep. Follow last field with lastSep. */ #define llaInfoTabOut(el,f) llaInfoOutput(el,f,'\t','\n'); /* Print out llaInfo as a line in a tab-separated file. */ #define llaInfoCommaOut(el,f) llaInfoOutput(el,f,',',','); /* Print out llaInfo as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* LLAINFO_H */