e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/pslWQueryID.h src/hg/inc/pslWQueryID.h
index 25e4e19..d6be17e 100644
--- src/hg/inc/pslWQueryID.h
+++ src/hg/inc/pslWQueryID.h
@@ -1,78 +1,81 @@
 /* pslWQueryID.h was originally generated by the autoSql program, which also 
  * generated pslWQueryID.c and pslWQueryID.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2004 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef PSLWQUERYID_H
 #define PSLWQUERYID_H
 
 #define PSLWQUERYID_NUM_COLS 22
 
 struct pslWQueryID
 /* Summary info about a patSpace alignment with a query ID addition */
     {
     struct pslWQueryID *next;  /* Next in singly linked list. */
     unsigned matches;	/* Number of bases that match that aren't repeats */
     unsigned misMatches;	/* Number of bases that don't match */
     unsigned repMatches;	/* Number of bases that match but are part of repeats */
     unsigned nCount;	/* Number of 'N' bases */
     unsigned qNumInsert;	/* Number of inserts in query */
     unsigned qBaseInsert;	/* Number of bases inserted in query */
     unsigned tNumInsert;	/* Number of inserts in target */
     unsigned tBaseInsert;	/* Number of bases inserted in target */
     char strand[3];	/* + or - for query strand. For mouse second +/- for genomic strand */
     char *qName;	/* Query sequence name */
     unsigned qSize;	/* Query sequence size */
     unsigned qStart;	/* Alignment start position in query */
     unsigned qEnd;	/* Alignment end position in query */
     char *tName;	/* Target sequence name */
     unsigned tSize;	/* Target sequence size */
     unsigned tStart;	/* Alignment start position in target */
     unsigned tEnd;	/* Alignment end position in target */
     unsigned blockCount;	/* Number of blocks in alignment */
     unsigned *blockSizes;	/* Size of each block */
     unsigned *qStarts;	/* Start of each block in query. */
     unsigned *tStarts;	/* Start of each block in target. */
     char *queryID;	/* query ID field */
     };
 
 struct pslWQueryID *pslWQueryIDLoad(char **row);
 /* Load a pslWQueryID from row fetched with select * from pslWQueryID
  * from database.  Dispose of this with pslWQueryIDFree(). */
 
 struct pslWQueryID *pslWQueryIDLoadAll(char *fileName);
 /* Load all pslWQueryID from whitespace-separated file.
  * Dispose of this with pslWQueryIDFreeList(). */
 
 struct pslWQueryID *pslWQueryIDLoadAllByChar(char *fileName, char chopper);
 /* Load all pslWQueryID from chopper separated file.
  * Dispose of this with pslWQueryIDFreeList(). */
 
 #define pslWQueryIDLoadAllByTab(a) pslWQueryIDLoadAllByChar(a, '\t');
 /* Load all pslWQueryID from tab separated file.
  * Dispose of this with pslWQueryIDFreeList(). */
 
 struct pslWQueryID *pslWQueryIDCommaIn(char **pS, struct pslWQueryID *ret);
 /* Create a pslWQueryID out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new pslWQueryID */
 
 void pslWQueryIDFree(struct pslWQueryID **pEl);
 /* Free a single dynamically allocated pslWQueryID such as created
  * with pslWQueryIDLoad(). */
 
 void pslWQueryIDFreeList(struct pslWQueryID **pList);
 /* Free a list of dynamically allocated pslWQueryID's */
 
 void pslWQueryIDOutput(struct pslWQueryID *el, FILE *f, char sep, char lastSep);
 /* Print out pslWQueryID.  Separate fields with sep. Follow last field with lastSep. */
 
 #define pslWQueryIDTabOut(el,f) pslWQueryIDOutput(el,f,'\t','\n');
 /* Print out pslWQueryID as a line in a tab-separated file. */
 
 #define pslWQueryIDCommaOut(el,f) pslWQueryIDOutput(el,f,',',',');
 /* Print out pslWQueryID as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* PSLWQUERYID_H */