e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/putaInfo.h src/hg/inc/putaInfo.h
index 92cee1f..445fca2 100644
--- src/hg/inc/putaInfo.h
+++ src/hg/inc/putaInfo.h
@@ -1,91 +1,94 @@
 /* putaInfo.h was originally generated by the autoSql program, which also 
  * generated putaInfo.c and putaInfo.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef PUTAINFO_H
 #define PUTAINFO_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define PUTAINFO_NUM_COLS 17
 
 struct putaInfo
 /* store the general info for a putative real or pseudo gene */
     {
     struct putaInfo *next;  /* Next in singly linked list. */
     char *chrom;	/* stamp's chrom */
     unsigned chromStart;	/* stamp's chrom start */
     unsigned chromEnd;	/* stamp's chromEnd */
     char *name;	/* stamp's name */
     unsigned score;	/* aligned score */
     char *strand;	/* stamp's strand */
     char *oChrom;	/* stamper chrom */
     unsigned oChromStart;	/* stamper chrom start */
     unsigned oChromEnd;	/* stamper chrom end */
     unsigned blockCount;	/* total stamper blocks */
     unsigned stop;	/* 1 .. with stop; 0 .. without stop */
     unsigned tExons[2];	/* stamper (cds) exons */
     unsigned qExons[4];	/* stamp (mapped) (cds) exons */
     unsigned qBases[4];	/* stamp (aligend) (cds) bases */
     unsigned repeats[2];	/* (cds) has repeat inserted */
     unsigned *stops;	/* stops for each exon */
     double id[2];	/* (cds) aligned Identity */
     };
 
 struct putaInfo *putaInfoLoad(char **row);
 /* Load a putaInfo from row fetched with select * from putaInfo
  * from database.  Dispose of this with putaInfoFree(). */
 
 struct putaInfo *putaInfoLoadAll(char *fileName);
 /* Load all putaInfo from whitespace-separated file.
  * Dispose of this with putaInfoFreeList(). */
 
 struct putaInfo *putaInfoLoadAllByChar(char *fileName, char chopper);
 /* Load all putaInfo from chopper separated file.
  * Dispose of this with putaInfoFreeList(). */
 
 #define putaInfoLoadAllByTab(a) putaInfoLoadAllByChar(a, '\t');
 /* Load all putaInfo from tab separated file.
  * Dispose of this with putaInfoFreeList(). */
 
 struct putaInfo *putaInfoLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all putaInfo from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with putaInfoFreeList(). */
 
 void putaInfoSaveToDb(struct sqlConnection *conn, struct putaInfo *el, char *tableName, int updateSize);
 /* Save putaInfo as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct putaInfo *putaInfoCommaIn(char **pS, struct putaInfo *ret);
 /* Create a putaInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new putaInfo */
 
 void putaInfoFree(struct putaInfo **pEl);
 /* Free a single dynamically allocated putaInfo such as created
  * with putaInfoLoad(). */
 
 void putaInfoFreeList(struct putaInfo **pList);
 /* Free a list of dynamically allocated putaInfo's */
 
 void putaInfoOutput(struct putaInfo *el, FILE *f, char sep, char lastSep);
 /* Print out putaInfo.  Separate fields with sep. Follow last field with lastSep. */
 
 #define putaInfoTabOut(el,f) putaInfoOutput(el,f,'\t','\n');
 /* Print out putaInfo as a line in a tab-separated file. */
 
 #define putaInfoCommaOut(el,f) putaInfoOutput(el,f,',',',');
 /* Print out putaInfo as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* PUTAINFO_H */