e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/rnaHybridization.h src/hg/inc/rnaHybridization.h
index 47315d8..7505cc1 100644
--- src/hg/inc/rnaHybridization.h
+++ src/hg/inc/rnaHybridization.h
@@ -1,98 +1,101 @@
 /* rnaHybridization.h was originally generated by the autoSql program, which also 
  * generated rnaHybridization.c and rnaHybridization.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef RNAHYBRIDIZATION_H
 #define RNAHYBRIDIZATION_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define RNAHYBRIDIZATION_NUM_COLS 20
 
 struct rnaHybridization
 /* perfect hybridizations on RNA level */
     {
     struct rnaHybridization *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome for pattern region */
     unsigned chromEnd;	/* End position in chromosome for pattern region */
     char *name;	/* match name */
     unsigned dummy;	/* dummy field to align with bed 6 structure */
     char strand[2];	/* strand for pattern region */
     char *chromTarget;	/* Reference sequence chromosome for target region */
     unsigned chromStartTarget;	/* Start position in chromosome for target region */
     unsigned chromEndTarget;	/* End position in chromosome for target region */
     char strandTarget[2];	/* strand for target region */
     char *refSeqTarget;	/* refSeq gene name for target or empty */
     char *aorfTarget;	/* AORF gene name for target or empty */
     char *igenicsTarget;	/* intergenics name for target or empty */
     char *trnaTarget;	/*  */
     char *JGITarget;	/*  */
     char *patternSeq;	/* Sequence of pattern region 5'-3' */
     char *targetSeq;	/* Sequence of target region 3'-5' */
     float gcContent;	/* GC content ranging from 0 to 1 */
     unsigned matchLength;	/* Length of hybridization site */
     unsigned targetAnnotation;	/* 1 if target is annotated on same strand, zero otherwise */
     };
 
 void rnaHybridizationStaticLoad(char **row, struct rnaHybridization *ret);
 /* Load a row from rnaHybridization table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct rnaHybridization *rnaHybridizationLoad(char **row);
 /* Load a rnaHybridization from row fetched with select * from rnaHybridization
  * from database.  Dispose of this with rnaHybridizationFree(). */
 
 struct rnaHybridization *rnaHybridizationLoadAll(char *fileName);
 /* Load all rnaHybridization from whitespace-separated file.
  * Dispose of this with rnaHybridizationFreeList(). */
 
 struct rnaHybridization *rnaHybridizationLoadAllByChar(char *fileName, char chopper);
 /* Load all rnaHybridization from chopper separated file.
  * Dispose of this with rnaHybridizationFreeList(). */
 
 #define rnaHybridizationLoadAllByTab(a) rnaHybridizationLoadAllByChar(a, '\t');
 /* Load all rnaHybridization from tab separated file.
  * Dispose of this with rnaHybridizationFreeList(). */
 
 struct rnaHybridization *rnaHybridizationLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all rnaHybridization from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with rnaHybridizationFreeList(). */
 
 void rnaHybridizationSaveToDb(struct sqlConnection *conn, struct rnaHybridization *el, char *tableName, int updateSize);
 /* Save rnaHybridization as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct rnaHybridization *rnaHybridizationCommaIn(char **pS, struct rnaHybridization *ret);
 /* Create a rnaHybridization out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rnaHybridization */
 
 void rnaHybridizationFree(struct rnaHybridization **pEl);
 /* Free a single dynamically allocated rnaHybridization such as created
  * with rnaHybridizationLoad(). */
 
 void rnaHybridizationFreeList(struct rnaHybridization **pList);
 /* Free a list of dynamically allocated rnaHybridization's */
 
 void rnaHybridizationOutput(struct rnaHybridization *el, FILE *f, char sep, char lastSep);
 /* Print out rnaHybridization.  Separate fields with sep. Follow last field with lastSep. */
 
 #define rnaHybridizationTabOut(el,f) rnaHybridizationOutput(el,f,'\t','\n');
 /* Print out rnaHybridization as a line in a tab-separated file. */
 
 #define rnaHybridizationCommaOut(el,f) rnaHybridizationOutput(el,f,',',',');
 /* Print out rnaHybridization as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* RNAHYBRIDIZATION_H */