e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/stsMapMouseNew.h src/hg/inc/stsMapMouseNew.h index fd11419..a4894cd 100644 --- src/hg/inc/stsMapMouseNew.h +++ src/hg/inc/stsMapMouseNew.h @@ -1,75 +1,78 @@ /* stsMapMouseNew.h was originally generated by the autoSql program, which also * generated stsMapMouseNew.c and stsMapMouseNew.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2004 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef STSMAPMOUSENEW_H #define STSMAPMOUSENEW_H #define STSMAPMOUSENEW_NUM_COLS 15 struct stsMapMouseNew /* STS marker and its position on golden path and various maps */ { struct stsMapMouseNew *next; /* Next in singly linked list. */ char *chrom; /* Chromosome or 'unknown' */ int chromStart; /* Start position in chrom - negative 1 if unpositioned */ unsigned chromEnd; /* End position in chrom */ char *name; /* Name of STS marker */ unsigned score; /* Score of a marker = 1000/(#placements) when placed uniquely, else 1500/(#placements) when placed in multiple locations */ unsigned identNo; /* Identification number of STS */ char *ctgAcc; /* Contig accession number */ char *otherAcc; /* Accession number of other contigs that the marker hits */ char *rhChrom; /* Chromosome (no chr) from RH map or 0 if none */ float rhPos; /* Position on rh map */ float rhLod; /* Lod score of RH map */ char *wigChr; /* Chromosome (no chr) from FHHxACI genetic or 0 if none */ float wigPos; /* Position on FHHxACI map */ char *mgiChrom; /* Chromosome (no chr) from SHRSPxBN geneticmap or 0 if none */ float mgiPos; /* Position on SHRSPxBN genetic map */ }; void stsMapMouseNewStaticLoad(char **row, struct stsMapMouseNew *ret); /* Load a row from stsMapMouseNew table into ret. The contents of ret will * be replaced at the next call to this function. */ struct stsMapMouseNew *stsMapMouseNewLoad(char **row); /* Load a stsMapMouseNew from row fetched with select * from stsMapMouseNew * from database. Dispose of this with stsMapMouseNewFree(). */ struct stsMapMouseNew *stsMapMouseNewLoadAll(char *fileName); /* Load all stsMapMouseNew from whitespace-separated file. * Dispose of this with stsMapMouseNewFreeList(). */ struct stsMapMouseNew *stsMapMouseNewLoadAllByChar(char *fileName, char chopper); /* Load all stsMapMouseNew from chopper separated file. * Dispose of this with stsMapMouseNewFreeList(). */ #define stsMapMouseNewLoadAllByTab(a) stsMapMouseNewLoadAllByChar(a, '\t'); /* Load all stsMapMouseNew from tab separated file. * Dispose of this with stsMapMouseNewFreeList(). */ struct stsMapMouseNew *stsMapMouseNewCommaIn(char **pS, struct stsMapMouseNew *ret); /* Create a stsMapMouseNew out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new stsMapMouseNew */ void stsMapMouseNewFree(struct stsMapMouseNew **pEl); /* Free a single dynamically allocated stsMapMouseNew such as created * with stsMapMouseNewLoad(). */ void stsMapMouseNewFreeList(struct stsMapMouseNew **pList); /* Free a list of dynamically allocated stsMapMouseNew's */ void stsMapMouseNewOutput(struct stsMapMouseNew *el, FILE *f, char sep, char lastSep); /* Print out stsMapMouseNew. Separate fields with sep. Follow last field with lastSep. */ #define stsMapMouseNewTabOut(el,f) stsMapMouseNewOutput(el,f,'\t','\n'); /* Print out stsMapMouseNew as a line in a tab-separated file. */ #define stsMapMouseNewCommaOut(el,f) stsMapMouseNewOutput(el,f,',',','); /* Print out stsMapMouseNew as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* STSMAPMOUSENEW_H */