e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/stsMapRat.h src/hg/inc/stsMapRat.h index ab80ee9..389c675 100644 --- src/hg/inc/stsMapRat.h +++ src/hg/inc/stsMapRat.h @@ -1,65 +1,68 @@ /* stsMapRat.h was originally generated by the autoSql program, which also * generated stsMapRat.c and stsMapRat.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2004 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef STSMAPRAT_H #define STSMAPRAT_H struct stsMapRat /* STS marker and its position on golden path and various maps */ { struct stsMapRat *next; /* Next in singly linked list. */ char *chrom; /* Chromosome or 'unknown' */ int chromStart; /* Start position in chrom - negative 1 if unpositioned */ unsigned chromEnd; /* End position in chrom */ char *name; /* Name of STS marker */ unsigned score; /* Score of a marker = 1000/(#placements) when placed uniquely, else 1500/(#placements) when placed in multiple locations */ unsigned identNo; /* Identification number of STS */ char *ctgAcc; /* Contig accession number */ char *otherAcc; /* Accession number of other contigs that the marker hits */ char *rhChrom; /* Chromosome (no chr) from RH map or 0 if none */ float rhPos; /* Position on rh map */ float rhLod; /* Lod score of RH map */ char *fhhChr; /* Chromosome (no chr) from FHHxACI genetic or 0 if none */ float fhhPos; /* Position on FHHxACI map */ char *shrspChrom; /* Chromosome (no chr) from SHRSPxBN geneticmap or 0 if none */ float shrspPos; /* Position on SHRSPxBN genetic map */ }; void stsMapRatStaticLoad(char **row, struct stsMapRat *ret); /* Load a row from stsMapRat table into ret. The contents of ret will * be replaced at the next call to this function. */ struct stsMapRat *stsMapRatLoad(char **row); /* Load a stsMapRat from row fetched with select * from stsMapRat * from database. Dispose of this with stsMapRatFree(). */ struct stsMapRat *stsMapRatLoadAll(char *fileName); /* Load all stsMapRat from a tab-separated file. * Dispose of this with stsMapRatFreeList(). */ struct stsMapRat *stsMapRatCommaIn(char **pS, struct stsMapRat *ret); /* Create a stsMapRat out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new stsMapRat */ void stsMapRatFree(struct stsMapRat **pEl); /* Free a single dynamically allocated stsMapRat such as created * with stsMapRatLoad(). */ void stsMapRatFreeList(struct stsMapRat **pList); /* Free a list of dynamically allocated stsMapRat's */ void stsMapRatOutput(struct stsMapRat *el, FILE *f, char sep, char lastSep); /* Print out stsMapRat. Separate fields with sep. Follow last field with lastSep. */ #define stsMapRatTabOut(el,f) stsMapRatOutput(el,f,'\t','\n'); /* Print out stsMapRat as a line in a tab-separated file. */ #define stsMapRatCommaOut(el,f) stsMapRatOutput(el,f,',',','); /* Print out stsMapRat as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* STSMAPRAT_H */