e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/taxonXref.h src/hg/inc/taxonXref.h index 92e5f1c..40399d9 100644 --- src/hg/inc/taxonXref.h +++ src/hg/inc/taxonXref.h @@ -1,82 +1,85 @@ /* taxonXref.h was originally generated by the autoSql program, which also * generated taxonXref.c and taxonXref.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2013 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef TAXONXREF_H #define TAXONXREF_H #ifndef JKSQL_H #include "jksql.h" #endif #define TAXONXREF_NUM_COLS 4 struct taxonXref /* mapping from ucsc organism name to ncbi tax id/name */ { struct taxonXref *next; /* Next in singly linked list. */ char *organism; /* UCSC organism name */ unsigned taxon; /* NCBI taxon ID */ char *name; /* NCBI taxon name Binomial format */ char *toGenus; /* NCBI tree down to Genus */ }; void taxonXrefStaticLoad(char **row, struct taxonXref *ret); /* Load a row from taxonXref table into ret. The contents of ret will * be replaced at the next call to this function. */ struct taxonXref *taxonXrefLoad(char **row); /* Load a taxonXref from row fetched with select * from taxonXref * from database. Dispose of this with taxonXrefFree(). */ struct taxonXref *taxonXrefLoadAll(char *fileName); /* Load all taxonXref from whitespace-separated file. * Dispose of this with taxonXrefFreeList(). */ struct taxonXref *taxonXrefLoadAllByChar(char *fileName, char chopper); /* Load all taxonXref from chopper separated file. * Dispose of this with taxonXrefFreeList(). */ #define taxonXrefLoadAllByTab(a) taxonXrefLoadAllByChar(a, '\t'); /* Load all taxonXref from tab separated file. * Dispose of this with taxonXrefFreeList(). */ struct taxonXref *taxonXrefLoadByQuery(struct sqlConnection *conn, char *query); /* Load all taxonXref from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with taxonXrefFreeList(). */ void taxonXrefSaveToDb(struct sqlConnection *conn, struct taxonXref *el, char *tableName, int updateSize); /* Save taxonXref as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */ struct taxonXref *taxonXrefCommaIn(char **pS, struct taxonXref *ret); /* Create a taxonXref out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new taxonXref */ void taxonXrefFree(struct taxonXref **pEl); /* Free a single dynamically allocated taxonXref such as created * with taxonXrefLoad(). */ void taxonXrefFreeList(struct taxonXref **pList); /* Free a list of dynamically allocated taxonXref's */ void taxonXrefOutput(struct taxonXref *el, FILE *f, char sep, char lastSep); /* Print out taxonXref. Separate fields with sep. Follow last field with lastSep. */ #define taxonXrefTabOut(el,f) taxonXrefOutput(el,f,'\t','\n'); /* Print out taxonXref as a line in a tab-separated file. */ #define taxonXrefCommaOut(el,f) taxonXrefOutput(el,f,',',','); /* Print out taxonXref as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* TAXONXREF_H */