e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/txEdgeOrtho.h src/hg/inc/txEdgeOrtho.h
index c8bacb5..bf741da 100644
--- src/hg/inc/txEdgeOrtho.h
+++ src/hg/inc/txEdgeOrtho.h
@@ -1,84 +1,87 @@
 /* txEdgeOrtho.h was originally generated by the autoSql program, which also 
  * generated txEdgeOrtho.c and txEdgeOrtho.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2007 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef TXEDGEORTHO_H
 #define TXEDGEORTHO_H
 
 #define TXEDGEORTHO_NUM_COLS 19
 
 enum txEdgeOrthoType
     {
     txEdgeOrthoExon = 0,
     txEdgeOrthoIntron = 1,
     };
 struct txEdgeOrtho
 /* A transcription edge with additional orthology information. */
     {
     struct txEdgeOrtho *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome or contig name */
     int chromStart;	/* Start position, zero-based */
     int chromEnd;	/* End position, non-inclusive */
     char *name;	/* Name of txGraph in other organism */
     int score;	/* Parts per thousand of edge that align */
     char strand[2];	/* Strand - either plus or minus */
     char startType[2];	/* [ or ( for hard or soft */
     enum txEdgeOrthoType type;	/* edge type */
     char endType[2];	/* ] or ) for hard or soft */
     char *mappedChrom;	/* Chromosome in other organism */
     int mappedStart;	/* ChromStart mapped to other organism */
     int mappedEnd;	/* ChromEnd mapped to other organism */
     char *txGraph;	/* Transcription graph name in this organism */
     int overlapScore;	/* Parts per thousand of mapped/ortho overlap */
     char orthoStrand[2];	/* Strand of orthologous txGraph */
     char orthoStartType[2];	/* Is orthologous start hard/soft? */
     char orthoEndType[2];	/* Is orthologous end hard/soft? */
     int orthoStart;	/* Start of orthologous edge (based on RNA in other species) */
     int orthoEnd;	/* End of orthologous edge (based on RNA in other species) */
     };
 
 void txEdgeOrthoStaticLoad(char **row, struct txEdgeOrtho *ret);
 /* Load a row from txEdgeOrtho table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct txEdgeOrtho *txEdgeOrthoLoad(char **row);
 /* Load a txEdgeOrtho from row fetched with select * from txEdgeOrtho
  * from database.  Dispose of this with txEdgeOrthoFree(). */
 
 struct txEdgeOrtho *txEdgeOrthoLoadAll(char *fileName);
 /* Load all txEdgeOrtho from whitespace-separated file.
  * Dispose of this with txEdgeOrthoFreeList(). */
 
 struct txEdgeOrtho *txEdgeOrthoLoadAllByChar(char *fileName, char chopper);
 /* Load all txEdgeOrtho from chopper separated file.
  * Dispose of this with txEdgeOrthoFreeList(). */
 
 #define txEdgeOrthoLoadAllByTab(a) txEdgeOrthoLoadAllByChar(a, '\t');
 /* Load all txEdgeOrtho from tab separated file.
  * Dispose of this with txEdgeOrthoFreeList(). */
 
 struct txEdgeOrtho *txEdgeOrthoCommaIn(char **pS, struct txEdgeOrtho *ret);
 /* Create a txEdgeOrtho out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new txEdgeOrtho */
 
 void txEdgeOrthoFree(struct txEdgeOrtho **pEl);
 /* Free a single dynamically allocated txEdgeOrtho such as created
  * with txEdgeOrthoLoad(). */
 
 void txEdgeOrthoFreeList(struct txEdgeOrtho **pList);
 /* Free a list of dynamically allocated txEdgeOrtho's */
 
 void txEdgeOrthoOutput(struct txEdgeOrtho *el, FILE *f, char sep, char lastSep);
 /* Print out txEdgeOrtho.  Separate fields with sep. Follow last field with lastSep. */
 
 #define txEdgeOrthoTabOut(el,f) txEdgeOrthoOutput(el,f,'\t','\n');
 /* Print out txEdgeOrtho as a line in a tab-separated file. */
 
 #define txEdgeOrthoCommaOut(el,f) txEdgeOrthoOutput(el,f,',',',');
 /* Print out txEdgeOrtho as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* TXEDGEORTHO_H */