e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/variome.h src/hg/inc/variome.h
index 5c7333d..1ef4a40 100644
--- src/hg/inc/variome.h
+++ src/hg/inc/variome.h
@@ -1,111 +1,114 @@
 /* variome.h was originally generated by the autoSql program, which also 
  * generated variome.c and variome.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef VARIOME_H
 #define VARIOME_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define VARIOME_NUM_COLS 16
 
 struct variome
 /* variome bed 6+ structure */
     {
     struct variome *next;  /* Next in singly linked list. */
     unsigned short bin;	/* used for efficient position indexing */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of item */
     unsigned score;	/* Score from 0-1000 */
     char strand[2];	/* + or - */
     char *db;	/* database for item */
     char *owner;	/* creator of item */
     char *color;	/* rgb color of item (currently unused) */
     char *class;	/* classification of item (browser group) */
     char *creationDate;	/* date item created */
     char *lastModifiedDate;	/* date item last updated */
     char *descriptionKey;	/* name of wiki description page */
     unsigned id;	/* auto-increment item ID */
     char *geneSymbol;	/* knownGene kgXref geneSymbol name */
     };
 
 void variomeStaticLoad(char **row, struct variome *ret);
 /* Load a row from variome table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct variome *variomeLoad(char **row);
 /* Load a variome from row fetched with select * from variome
  * from database.  Dispose of this with variomeFree(). */
 
 struct variome *variomeLoadAll(char *fileName);
 /* Load all variome from whitespace-separated file.
  * Dispose of this with variomeFreeList(). */
 
 struct variome *variomeLoadAllByChar(char *fileName, char chopper);
 /* Load all variome from chopper separated file.
  * Dispose of this with variomeFreeList(). */
 
 #define variomeLoadAllByTab(a) variomeLoadAllByChar(a, '\t');
 /* Load all variome from tab separated file.
  * Dispose of this with variomeFreeList(). */
 
 struct variome *variomeLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all variome from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with variomeFreeList(). */
 
 void variomeSaveToDb(struct sqlConnection *conn, struct variome *el, char *tableName, int updateSize);
 /* Save variome as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct variome *variomeCommaIn(char **pS, struct variome *ret);
 /* Create a variome out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new variome */
 
 void variomeFree(struct variome **pEl);
 /* Free a single dynamically allocated variome such as created
  * with variomeLoad(). */
 
 void variomeFreeList(struct variome **pList);
 /* Free a list of dynamically allocated variome's */
 
 void variomeOutput(struct variome *el, FILE *f, char sep, char lastSep);
 /* Print out variome.  Separate fields with sep. Follow last field with lastSep. */
 
 #define variomeTabOut(el,f) variomeOutput(el,f,'\t','\n');
 /* Print out variome as a line in a tab-separated file. */
 
 #define variomeCommaOut(el,f) variomeOutput(el,f,',',',');
 /* Print out variome as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 extern char *variomeClassList[];
 extern int variomeClassCnt;
 extern char *variomeCoorList[];
 
 struct variome *findVariomeItemId(char *db, char *wikiItemId);
 /* given a wikiItemId return the row from the table */
 
 int addVariomeItem(char *db, char *chrom, int start, int end,
     char *name, int score, char *strand, char *owner, char *class,
         char *color, char *category, char *geneSymbol, char *wikiKey);
 /* create new Variome row with given parameters */
 
 void updateVariomeLastModifiedDate(char *db, int id);
 /* set lastModifiedDate to now() */
 
 void deleteVariomeItem(char *db, int id);
 /* delete the item with specified id */
 
 #endif /* VARIOME_H */