e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/vntr.h src/hg/inc/vntr.h index 6fa7c18..f0c6e38 100644 --- src/hg/inc/vntr.h +++ src/hg/inc/vntr.h @@ -1,70 +1,73 @@ /* vntr.h was originally generated by the autoSql program, which also * generated vntr.c and vntr.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2004 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef VNTR_H #define VNTR_H #define VNTR_NUM_COLS 10 struct vntr /* Microsatellites from Gerome Breen's VNTR program (bed 4+) */ { struct vntr *next; /* Next in singly linked list. */ char *chrom; /* chrom */ unsigned chromStart; /* Start position in chromosome */ unsigned chromEnd; /* End position in chromosome */ char *name; /* Name of item (Repeat unit) */ float repeatCount; /* Number of perfect repeats */ int distanceToLast; /* Distance to previous microsat. repeat */ int distanceToNext; /* Distance to next microsat. repeat */ char *forwardPrimer; /* Forward PCR primer sequence (or Design_Failed) */ char *reversePrimer; /* Reverse PCR primer sequence (or Design_Failed) */ char *pcrLength; /* PCR product length (or Design_Failed) */ }; void vntrStaticLoad(char **row, struct vntr *ret); /* Load a row from vntr table into ret. The contents of ret will * be replaced at the next call to this function. */ struct vntr *vntrLoad(char **row); /* Load a vntr from row fetched with select * from vntr * from database. Dispose of this with vntrFree(). */ struct vntr *vntrLoadAll(char *fileName); /* Load all vntr from whitespace-separated file. * Dispose of this with vntrFreeList(). */ struct vntr *vntrLoadAllByChar(char *fileName, char chopper); /* Load all vntr from chopper separated file. * Dispose of this with vntrFreeList(). */ #define vntrLoadAllByTab(a) vntrLoadAllByChar(a, '\t'); /* Load all vntr from tab separated file. * Dispose of this with vntrFreeList(). */ struct vntr *vntrCommaIn(char **pS, struct vntr *ret); /* Create a vntr out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new vntr */ void vntrFree(struct vntr **pEl); /* Free a single dynamically allocated vntr such as created * with vntrLoad(). */ void vntrFreeList(struct vntr **pList); /* Free a list of dynamically allocated vntr's */ void vntrOutput(struct vntr *el, FILE *f, char sep, char lastSep); /* Print out vntr. Separate fields with sep. Follow last field with lastSep. */ #define vntrTabOut(el,f) vntrOutput(el,f,'\t','\n'); /* Print out vntr as a line in a tab-separated file. */ #define vntrCommaOut(el,f) vntrOutput(el,f,',',','); /* Print out vntr as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* VNTR_H */