e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/affyPairs.c src/hg/lib/affyPairs.c
index f4a40bb..b1b3ac4 100644
--- src/hg/lib/affyPairs.c
+++ src/hg/lib/affyPairs.c
@@ -1,155 +1,158 @@
 /* affyPairs.c was originally generated by the autoSql program, which also 
  * generated affyPairs.h and affyPairs.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "affyPairs.h"
 
 
 void affyPairsStaticLoad(char **row, struct affyPairs *ret)
 /* Load a row from affyPairs table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 ret->x = sqlUnsigned(row[0]);
 ret->y = sqlUnsigned(row[1]);
 ret->probeSet = row[2];
 ret->method = row[3];
 ret->tBase = sqlUnsigned(row[4]);
 ret->pos = sqlUnsigned(row[5]);
 ret->pm = atof(row[6]);
 ret->pms = atof(row[7]);
 ret->pmp = atof(row[8]);
 ret->mm = atof(row[9]);
 ret->mms = atof(row[10]);
 ret->mmp = atof(row[11]);
 }
 
 struct affyPairs *affyPairsLoad(char **row)
 /* Load a affyPairs from row fetched with select * from affyPairs
  * from database.  Dispose of this with affyPairsFree(). */
 {
 struct affyPairs *ret;
 
 AllocVar(ret);
 ret->x = sqlUnsigned(row[0]);
 ret->y = sqlUnsigned(row[1]);
 ret->probeSet = cloneString(row[2]);
 ret->method = cloneString(row[3]);
 ret->tBase = sqlUnsigned(row[4]);
 ret->pos = sqlUnsigned(row[5]);
 ret->pm = atof(row[6]);
 ret->pms = atof(row[7]);
 ret->pmp = atof(row[8]);
 ret->mm = atof(row[9]);
 ret->mms = atof(row[10]);
 ret->mmp = atof(row[11]);
 return ret;
 }
 
 struct affyPairs *affyPairsLoadAll(char *fileName) 
 /* Load all affyPairs from a tab-separated file.
  * Dispose of this with affyPairsFreeList(). */
 {
 struct affyPairs *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 lineFileRow(lf, row); /* get rid of one line header. */
 while (lineFileRow(lf, row))
     {
     el = affyPairsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct affyPairs *affyPairsCommaIn(char **pS, struct affyPairs *ret)
 /* Create a affyPairs out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new affyPairs */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->x = sqlUnsignedComma(&s);
 ret->y = sqlUnsignedComma(&s);
 ret->probeSet = sqlStringComma(&s);
 ret->method = sqlStringComma(&s);
 ret->tBase = sqlUnsignedComma(&s);
 ret->pos = sqlUnsignedComma(&s);
 ret->pm = sqlFloatComma(&s);
 ret->pms = sqlFloatComma(&s);
 ret->pmp = sqlFloatComma(&s);
 ret->mm = sqlFloatComma(&s);
 ret->mms = sqlFloatComma(&s);
 ret->mmp = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void affyPairsFree(struct affyPairs **pEl)
 /* Free a single dynamically allocated affyPairs such as created
  * with affyPairsLoad(). */
 {
 struct affyPairs *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->probeSet);
 freeMem(el->method);
 freez(pEl);
 }
 
 void affyPairsFreeList(struct affyPairs **pList)
 /* Free a list of dynamically allocated affyPairs's */
 {
 struct affyPairs *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     affyPairsFree(&el);
     }
 *pList = NULL;
 }
 
 void affyPairsOutput(struct affyPairs *el, FILE *f, char sep, char lastSep) 
 /* Print out affyPairs.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%u", el->x);
 fputc(sep,f);
 fprintf(f, "%u", el->y);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->probeSet);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->method);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->tBase);
 fputc(sep,f);
 fprintf(f, "%u", el->pos);
 fputc(sep,f);
 fprintf(f, "%f", el->pm);
 fputc(sep,f);
 fprintf(f, "%f", el->pms);
 fputc(sep,f);
 fprintf(f, "%f", el->pmp);
 fputc(sep,f);
 fprintf(f, "%f", el->mm);
 fputc(sep,f);
 fprintf(f, "%f", el->mms);
 fputc(sep,f);
 fprintf(f, "%f", el->mmp);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */