e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/affyTransLifted.c src/hg/lib/affyTransLifted.c
index 9a05880..c3607d7 100644
--- src/hg/lib/affyTransLifted.c
+++ src/hg/lib/affyTransLifted.c
@@ -1,138 +1,141 @@
 /* affyTransLifted.c was originally generated by the autoSql program, which also 
  * generated affyTransLifted.h and affyTransLifted.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "affyTransLifted.h"
 
 
 void affyTransLiftedStaticLoad(char **row, struct affyTransLifted *ret)
 /* Load a row from affyTransLifted table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 int sizeOne,i;
 char *s;
 
 ret->chrom = row[0];
 ret->chromPos = sqlUnsigned(row[1]);
 ret->xCoord = sqlSigned(row[2]);
 ret->yCoord = sqlSigned(row[3]);
 ret->rawPM = sqlSigned(row[4]);
 ret->rawMM = sqlSigned(row[5]);
 ret->normPM = atof(row[6]);
 ret->normMM = atof(row[7]);
 }
 
 struct affyTransLifted *affyTransLiftedLoad(char **row)
 /* Load a affyTransLifted from row fetched with select * from affyTransLifted
  * from database.  Dispose of this with affyTransLiftedFree(). */
 {
 struct affyTransLifted *ret;
 int sizeOne,i;
 char *s;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromPos = sqlUnsigned(row[1]);
 ret->xCoord = sqlSigned(row[2]);
 ret->yCoord = sqlSigned(row[3]);
 ret->rawPM = sqlSigned(row[4]);
 ret->rawMM = sqlSigned(row[5]);
 ret->normPM = atof(row[6]);
 ret->normMM = atof(row[7]);
 return ret;
 }
 
 struct affyTransLifted *affyTransLiftedLoadAll(char *fileName) 
 /* Load all affyTransLifted from a tab-separated file.
  * Dispose of this with affyTransLiftedFreeList(). */
 {
 struct affyTransLifted *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = affyTransLiftedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct affyTransLifted *affyTransLiftedCommaIn(char **pS, struct affyTransLifted *ret)
 /* Create a affyTransLifted out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new affyTransLifted */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromPos = sqlUnsignedComma(&s);
 ret->xCoord = sqlSignedComma(&s);
 ret->yCoord = sqlSignedComma(&s);
 ret->rawPM = sqlSignedComma(&s);
 ret->rawMM = sqlSignedComma(&s);
 ret->normPM = sqlFloatComma(&s);
 ret->normMM = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void affyTransLiftedFree(struct affyTransLifted **pEl)
 /* Free a single dynamically allocated affyTransLifted such as created
  * with affyTransLiftedLoad(). */
 {
 struct affyTransLifted *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freez(pEl);
 }
 
 void affyTransLiftedFreeList(struct affyTransLifted **pList)
 /* Free a list of dynamically allocated affyTransLifted's */
 {
 struct affyTransLifted *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     affyTransLiftedFree(&el);
     }
 *pList = NULL;
 }
 
 void affyTransLiftedOutput(struct affyTransLifted *el, FILE *f, char sep, char lastSep) 
 /* Print out affyTransLifted.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromPos);
 fputc(sep,f);
 fprintf(f, "%d", el->xCoord);
 fputc(sep,f);
 fprintf(f, "%d", el->yCoord);
 fputc(sep,f);
 fprintf(f, "%d", el->rawPM);
 fputc(sep,f);
 fprintf(f, "%d", el->rawMM);
 fputc(sep,f);
 fprintf(f, "%f", el->normPM);
 fputc(sep,f);
 fprintf(f, "%f", el->normMM);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */