e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/agpGap.c src/hg/lib/agpGap.c
index b61ced3..e623ddd 100644
--- src/hg/lib/agpGap.c
+++ src/hg/lib/agpGap.c
@@ -1,117 +1,120 @@
 /* agpGap.c was originally generated by the autoSql program, which also 
  * generated agpGap.h and agpGap.sql.  This module links the database and the RAM 
  * representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "jksql.h"
 #include "agpGap.h"
 
 
 void agpGapStaticLoad(char **row, struct agpGap *ret)
 /* Load a row from agpGap table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->ix = sqlSigned(row[3]);
 strcpy(ret->n, row[4]);
 ret->size = sqlUnsigned(row[5]);
 ret->type = row[6];
 ret->bridge = row[7];
 }
 
 struct agpGap *agpGapLoad(char **row)
 /* Load a agpGap from row fetched with select * from agpGap
  * from database.  Dispose of this with agpGapFree(). */
 {
 struct agpGap *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->ix = sqlSigned(row[3]);
 strcpy(ret->n, row[4]);
 ret->size = sqlUnsigned(row[5]);
 ret->type = cloneString(row[6]);
 ret->bridge = cloneString(row[7]);
 return ret;
 }
 
 struct agpGap *agpGapCommaIn(char **pS, struct agpGap *ret)
 /* Create a agpGap out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new agpGap */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->ix = sqlSignedComma(&s);
 sqlFixedStringComma(&s, ret->n, sizeof(ret->n));
 ret->size = sqlUnsignedComma(&s);
 ret->type = sqlStringComma(&s);
 ret->bridge = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void agpGapFree(struct agpGap **pEl)
 /* Free a single dynamically allocated agpGap such as created
  * with agpGapLoad(). */
 {
 struct agpGap *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->type);
 freeMem(el->bridge);
 freez(pEl);
 }
 
 void agpGapFreeList(struct agpGap **pList)
 /* Free a list of dynamically allocated agpGap's */
 {
 struct agpGap *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     agpGapFree(&el);
     }
 *pList = NULL;
 }
 
 void agpGapOutput(struct agpGap *el, FILE *f, char sep, char lastSep) 
 /* Print out agpGap.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 fprintf(f, "%d", el->ix);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->n);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->size);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->bridge);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }