e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/ancientRref.c src/hg/lib/ancientRref.c
index 050fe41..b13855b 100644
--- src/hg/lib/ancientRref.c
+++ src/hg/lib/ancientRref.c
@@ -1,134 +1,137 @@
 /* ancientRref.c was originally generated by the autoSql program, which also 
  * generated ancientRref.h and ancientRref.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "ancientRref.h"
 
 
 void ancientRrefStaticLoad(char **row, struct ancientRref *ret)
 /* Load a row from ancientRref table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->name = row[1];
 ret->class = row[2];
 ret->family = row[3];
 ret->hseq = row[4];
 ret->mseq = row[5];
 }
 
 struct ancientRref *ancientRrefLoad(char **row)
 /* Load a ancientRref from row fetched with select * from ancientRref
  * from database.  Dispose of this with ancientRrefFree(). */
 {
 struct ancientRref *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->name = cloneString(row[1]);
 ret->class = cloneString(row[2]);
 ret->family = cloneString(row[3]);
 ret->hseq = cloneString(row[4]);
 ret->mseq = cloneString(row[5]);
 return ret;
 }
 
 struct ancientRref *ancientRrefLoadAll(char *fileName) 
 /* Load all ancientRref from a tab-separated file.
  * Dispose of this with ancientRrefFreeList(). */
 {
 struct ancientRref *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = ancientRrefLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ancientRref *ancientRrefCommaIn(char **pS, struct ancientRref *ret)
 /* Create a ancientRref out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ancientRref */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->name = sqlStringComma(&s);
 ret->class = sqlStringComma(&s);
 ret->family = sqlStringComma(&s);
 ret->hseq = sqlStringComma(&s);
 ret->mseq = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void ancientRrefFree(struct ancientRref **pEl)
 /* Free a single dynamically allocated ancientRref such as created
  * with ancientRrefLoad(). */
 {
 struct ancientRref *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->name);
 freeMem(el->class);
 freeMem(el->family);
 freeMem(el->hseq);
 freeMem(el->mseq);
 freez(pEl);
 }
 
 void ancientRrefFreeList(struct ancientRref **pList)
 /* Free a list of dynamically allocated ancientRref's */
 {
 struct ancientRref *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     ancientRrefFree(&el);
     }
 *pList = NULL;
 }
 
 void ancientRrefOutput(struct ancientRref *el, FILE *f, char sep, char lastSep) 
 /* Print out ancientRref.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->class);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->family);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->hseq);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mseq);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }