e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/lib/bdgpGeneInfo.c src/hg/lib/bdgpGeneInfo.c index fd45537..e77aa4c 100644 --- src/hg/lib/bdgpGeneInfo.c +++ src/hg/lib/bdgpGeneInfo.c @@ -1,155 +1,158 @@ /* bdgpGeneInfo.c was originally generated by the autoSql program, which also * generated bdgpGeneInfo.h and bdgpGeneInfo.sql. This module links the database and * the RAM representation of objects. */ +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "bdgpGeneInfo.h" void bdgpGeneInfoStaticLoad(char **row, struct bdgpGeneInfo *ret) /* Load a row from bdgpGeneInfo table into ret. The contents of ret will * be replaced at the next call to this function. */ { ret->bdgpName = row[0]; ret->flyBaseId = row[1]; ret->go = row[2]; ret->symbol = row[3]; ret->cytorange = row[4]; ret->cdna_clone = row[5]; } struct bdgpGeneInfo *bdgpGeneInfoLoad(char **row) /* Load a bdgpGeneInfo from row fetched with select * from bdgpGeneInfo * from database. Dispose of this with bdgpGeneInfoFree(). */ { struct bdgpGeneInfo *ret; AllocVar(ret); ret->bdgpName = cloneString(row[0]); ret->flyBaseId = cloneString(row[1]); ret->go = cloneString(row[2]); ret->symbol = cloneString(row[3]); ret->cytorange = cloneString(row[4]); ret->cdna_clone = cloneString(row[5]); return ret; } struct bdgpGeneInfo *bdgpGeneInfoLoadAll(char *fileName) /* Load all bdgpGeneInfo from a whitespace-separated file. * Dispose of this with bdgpGeneInfoFreeList(). */ { struct bdgpGeneInfo *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[6]; while (lineFileRow(lf, row)) { el = bdgpGeneInfoLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct bdgpGeneInfo *bdgpGeneInfoLoadAllByChar(char *fileName, char chopper) /* Load all bdgpGeneInfo from a chopper separated file. * Dispose of this with bdgpGeneInfoFreeList(). */ { struct bdgpGeneInfo *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[6]; while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) { el = bdgpGeneInfoLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct bdgpGeneInfo *bdgpGeneInfoCommaIn(char **pS, struct bdgpGeneInfo *ret) /* Create a bdgpGeneInfo out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new bdgpGeneInfo */ { char *s = *pS; if (ret == NULL) AllocVar(ret); ret->bdgpName = sqlStringComma(&s); ret->flyBaseId = sqlStringComma(&s); ret->go = sqlStringComma(&s); ret->symbol = sqlStringComma(&s); ret->cytorange = sqlStringComma(&s); ret->cdna_clone = sqlStringComma(&s); *pS = s; return ret; } void bdgpGeneInfoFree(struct bdgpGeneInfo **pEl) /* Free a single dynamically allocated bdgpGeneInfo such as created * with bdgpGeneInfoLoad(). */ { struct bdgpGeneInfo *el; if ((el = *pEl) == NULL) return; freeMem(el->bdgpName); freeMem(el->flyBaseId); freeMem(el->go); freeMem(el->symbol); freeMem(el->cytorange); freeMem(el->cdna_clone); freez(pEl); } void bdgpGeneInfoFreeList(struct bdgpGeneInfo **pList) /* Free a list of dynamically allocated bdgpGeneInfo's */ { struct bdgpGeneInfo *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; bdgpGeneInfoFree(&el); } *pList = NULL; } void bdgpGeneInfoOutput(struct bdgpGeneInfo *el, FILE *f, char sep, char lastSep) /* Print out bdgpGeneInfo. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->bdgpName); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->flyBaseId); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->go); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->symbol); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->cytorange); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->cdna_clone); if (sep == ',') fputc('"',f); fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */