e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/bdgpSwissProt.c src/hg/lib/bdgpSwissProt.c
index 271989d..6b17f05 100644
--- src/hg/lib/bdgpSwissProt.c
+++ src/hg/lib/bdgpSwissProt.c
@@ -1,177 +1,180 @@
 /* bdgpSwissProt.c was originally generated by the autoSql program, which also 
  * generated bdgpSwissProt.h and bdgpSwissProt.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "bdgpSwissProt.h"
 
 
 void bdgpSwissProtStaticLoad(char **row, struct bdgpSwissProt *ret)
 /* Load a row from bdgpSwissProt table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 int sizeOne,i;
 char *s;
 
 ret->bdgpName = row[0];
 ret->flyBaseId = row[1];
 ret->go = row[2];
 ret->symbol = row[3];
 ret->cytorange = row[4];
 ret->swissProtId = row[5];
 ret->spGeneName = row[6];
 ret->spSymbol = row[7];
 }
 
 struct bdgpSwissProt *bdgpSwissProtLoad(char **row)
 /* Load a bdgpSwissProt from row fetched with select * from bdgpSwissProt
  * from database.  Dispose of this with bdgpSwissProtFree(). */
 {
 struct bdgpSwissProt *ret;
 int sizeOne,i;
 char *s;
 
 AllocVar(ret);
 ret->bdgpName = cloneString(row[0]);
 ret->flyBaseId = cloneString(row[1]);
 ret->go = cloneString(row[2]);
 ret->symbol = cloneString(row[3]);
 ret->cytorange = cloneString(row[4]);
 ret->swissProtId = cloneString(row[5]);
 ret->spGeneName = cloneString(row[6]);
 ret->spSymbol = cloneString(row[7]);
 return ret;
 }
 
 struct bdgpSwissProt *bdgpSwissProtLoadAll(char *fileName) 
 /* Load all bdgpSwissProt from a whitespace-separated file.
  * Dispose of this with bdgpSwissProtFreeList(). */
 {
 struct bdgpSwissProt *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = bdgpSwissProtLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bdgpSwissProt *bdgpSwissProtLoadAllByChar(char *fileName, char chopper) 
 /* Load all bdgpSwissProt from a chopper separated file.
  * Dispose of this with bdgpSwissProtFreeList(). */
 {
 struct bdgpSwissProt *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = bdgpSwissProtLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bdgpSwissProt *bdgpSwissProtCommaIn(char **pS, struct bdgpSwissProt *ret)
 /* Create a bdgpSwissProt out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new bdgpSwissProt */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->bdgpName = sqlStringComma(&s);
 ret->flyBaseId = sqlStringComma(&s);
 ret->go = sqlStringComma(&s);
 ret->symbol = sqlStringComma(&s);
 ret->cytorange = sqlStringComma(&s);
 ret->swissProtId = sqlStringComma(&s);
 ret->spGeneName = sqlStringComma(&s);
 ret->spSymbol = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void bdgpSwissProtFree(struct bdgpSwissProt **pEl)
 /* Free a single dynamically allocated bdgpSwissProt such as created
  * with bdgpSwissProtLoad(). */
 {
 struct bdgpSwissProt *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->bdgpName);
 freeMem(el->flyBaseId);
 freeMem(el->go);
 freeMem(el->symbol);
 freeMem(el->cytorange);
 freeMem(el->swissProtId);
 freeMem(el->spGeneName);
 freeMem(el->spSymbol);
 freez(pEl);
 }
 
 void bdgpSwissProtFreeList(struct bdgpSwissProt **pList)
 /* Free a list of dynamically allocated bdgpSwissProt's */
 {
 struct bdgpSwissProt *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     bdgpSwissProtFree(&el);
     }
 *pList = NULL;
 }
 
 void bdgpSwissProtOutput(struct bdgpSwissProt *el, FILE *f, char sep, char lastSep) 
 /* Print out bdgpSwissProt.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->bdgpName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->flyBaseId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->go);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->symbol);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->cytorange);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->swissProtId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->spGeneName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->spSymbol);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */