e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/bed5Pval.c src/hg/lib/bed5Pval.c
index 5208ba7..500ea7e 100644
--- src/hg/lib/bed5Pval.c
+++ src/hg/lib/bed5Pval.c
@@ -1,143 +1,146 @@
 /* bed5Pval.c was originally generated by the autoSql program, which also 
  * generated bed5Pval.h and bed5Pval.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "bed5Pval.h"
 
 
 void bed5PvalStaticLoad(char **row, struct bed5Pval *ret)
 /* Load a row from bed5Pval table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlSigned(row[4]);
 ret->pValue = sqlFloat(row[5]);
 }
 
 struct bed5Pval *bed5PvalLoad(char **row)
 /* Load a bed5Pval from row fetched with select * from bed5Pval
  * from database.  Dispose of this with bed5PvalFree(). */
 {
 struct bed5Pval *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlSigned(row[4]);
 ret->pValue = sqlFloat(row[5]);
 return ret;
 }
 
 struct bed5Pval *bed5PvalLoadAll(char *fileName) 
 /* Load all bed5Pval from a whitespace-separated file.
  * Dispose of this with bed5PvalFreeList(). */
 {
 struct bed5Pval *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = bed5PvalLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bed5Pval *bed5PvalLoadAllByChar(char *fileName, char chopper) 
 /* Load all bed5Pval from a chopper separated file.
  * Dispose of this with bed5PvalFreeList(). */
 {
 struct bed5Pval *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = bed5PvalLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bed5Pval *bed5PvalCommaIn(char **pS, struct bed5Pval *ret)
 /* Create a bed5Pval out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new bed5Pval */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlSignedComma(&s);
 ret->pValue = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void bed5PvalFree(struct bed5Pval **pEl)
 /* Free a single dynamically allocated bed5Pval such as created
  * with bed5PvalLoad(). */
 {
 struct bed5Pval *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freez(pEl);
 }
 
 void bed5PvalFreeList(struct bed5Pval **pList)
 /* Free a list of dynamically allocated bed5Pval's */
 {
 struct bed5Pval *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     bed5PvalFree(&el);
     }
 *pList = NULL;
 }
 
 void bed5PvalOutput(struct bed5Pval *el, FILE *f, char sep, char lastSep) 
 /* Print out bed5Pval.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->score);
 fputc(sep,f);
 fprintf(f, "%g", el->pValue);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */