e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/bgiGeneSnp.c src/hg/lib/bgiGeneSnp.c
index f8a2f11..90e2a12 100644
--- src/hg/lib/bgiGeneSnp.c
+++ src/hg/lib/bgiGeneSnp.c
@@ -1,153 +1,156 @@
 /* bgiGeneSnp.c was originally generated by the autoSql program, which also 
  * generated bgiGeneSnp.h and bgiGeneSnp.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "bgiGeneSnp.h"
 
 
 void bgiGeneSnpStaticLoad(char **row, struct bgiGeneSnp *ret)
 /* Load a row from bgiGeneSnp table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 ret->geneName = row[0];
 ret->snpName = row[1];
 ret->geneAssoc = row[2];
 ret->effect = row[3];
 strcpy(ret->phase, row[4]);
 ret->siftComment = row[5];
 }
 
 struct bgiGeneSnp *bgiGeneSnpLoad(char **row)
 /* Load a bgiGeneSnp from row fetched with select * from bgiGeneSnp
  * from database.  Dispose of this with bgiGeneSnpFree(). */
 {
 struct bgiGeneSnp *ret;
 
 AllocVar(ret);
 ret->geneName = cloneString(row[0]);
 ret->snpName = cloneString(row[1]);
 ret->geneAssoc = cloneString(row[2]);
 ret->effect = cloneString(row[3]);
 strcpy(ret->phase, row[4]);
 ret->siftComment = cloneString(row[5]);
 return ret;
 }
 
 struct bgiGeneSnp *bgiGeneSnpLoadAll(char *fileName) 
 /* Load all bgiGeneSnp from a whitespace-separated file.
  * Dispose of this with bgiGeneSnpFreeList(). */
 {
 struct bgiGeneSnp *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = bgiGeneSnpLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bgiGeneSnp *bgiGeneSnpLoadAllByChar(char *fileName, char chopper) 
 /* Load all bgiGeneSnp from a chopper separated file.
  * Dispose of this with bgiGeneSnpFreeList(). */
 {
 struct bgiGeneSnp *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = bgiGeneSnpLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct bgiGeneSnp *bgiGeneSnpCommaIn(char **pS, struct bgiGeneSnp *ret)
 /* Create a bgiGeneSnp out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new bgiGeneSnp */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->geneName = sqlStringComma(&s);
 ret->snpName = sqlStringComma(&s);
 ret->geneAssoc = sqlStringComma(&s);
 ret->effect = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->phase, sizeof(ret->phase));
 ret->siftComment = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void bgiGeneSnpFree(struct bgiGeneSnp **pEl)
 /* Free a single dynamically allocated bgiGeneSnp such as created
  * with bgiGeneSnpLoad(). */
 {
 struct bgiGeneSnp *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->geneName);
 freeMem(el->snpName);
 freeMem(el->geneAssoc);
 freeMem(el->effect);
 freeMem(el->siftComment);
 freez(pEl);
 }
 
 void bgiGeneSnpFreeList(struct bgiGeneSnp **pList)
 /* Free a list of dynamically allocated bgiGeneSnp's */
 {
 struct bgiGeneSnp *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     bgiGeneSnpFree(&el);
     }
 *pList = NULL;
 }
 
 void bgiGeneSnpOutput(struct bgiGeneSnp *el, FILE *f, char sep, char lastSep) 
 /* Print out bgiGeneSnp.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->snpName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneAssoc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->effect);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->phase);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->siftComment);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */