e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/cdsPick.c src/hg/lib/cdsPick.c
index 52e68cf..8a83495 100644
--- src/hg/lib/cdsPick.c
+++ src/hg/lib/cdsPick.c
@@ -1,188 +1,191 @@
 /* cdsPick.c was originally generated by the autoSql program, which also 
  * generated cdsPick.h and cdsPick.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "cdsPick.h"
 
 
 void cdsPickStaticLoad(char **row, struct cdsPick *ret)
 /* Load a row from cdsPick table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->start = sqlSigned(row[1]);
 ret->end = sqlSigned(row[2]);
 ret->source = row[3];
 ret->score = sqlDouble(row[4]);
 ret->startComplete = sqlUnsigned(row[5]);
 ret->endComplete = sqlUnsigned(row[6]);
 ret->swissProt = row[7];
 ret->uniProt = row[8];
 ret->refProt = row[9];
 ret->refSeq = row[10];
 ret->ccds = row[11];
 }
 
 struct cdsPick *cdsPickLoad(char **row)
 /* Load a cdsPick from row fetched with select * from cdsPick
  * from database.  Dispose of this with cdsPickFree(). */
 {
 struct cdsPick *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->start = sqlSigned(row[1]);
 ret->end = sqlSigned(row[2]);
 ret->source = cloneString(row[3]);
 ret->score = sqlDouble(row[4]);
 ret->startComplete = sqlUnsigned(row[5]);
 ret->endComplete = sqlUnsigned(row[6]);
 ret->swissProt = cloneString(row[7]);
 ret->uniProt = cloneString(row[8]);
 ret->refProt = cloneString(row[9]);
 ret->refSeq = cloneString(row[10]);
 ret->ccds = cloneString(row[11]);
 return ret;
 }
 
 struct cdsPick *cdsPickLoadAll(char *fileName) 
 /* Load all cdsPick from a whitespace-separated file.
  * Dispose of this with cdsPickFreeList(). */
 {
 struct cdsPick *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileRow(lf, row))
     {
     el = cdsPickLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cdsPick *cdsPickLoadAllByChar(char *fileName, char chopper) 
 /* Load all cdsPick from a chopper separated file.
  * Dispose of this with cdsPickFreeList(). */
 {
 struct cdsPick *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = cdsPickLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cdsPick *cdsPickCommaIn(char **pS, struct cdsPick *ret)
 /* Create a cdsPick out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cdsPick */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->start = sqlSignedComma(&s);
 ret->end = sqlSignedComma(&s);
 ret->source = sqlStringComma(&s);
 ret->score = sqlDoubleComma(&s);
 ret->startComplete = sqlUnsignedComma(&s);
 ret->endComplete = sqlUnsignedComma(&s);
 ret->swissProt = sqlStringComma(&s);
 ret->uniProt = sqlStringComma(&s);
 ret->refProt = sqlStringComma(&s);
 ret->refSeq = sqlStringComma(&s);
 ret->ccds = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void cdsPickFree(struct cdsPick **pEl)
 /* Free a single dynamically allocated cdsPick such as created
  * with cdsPickLoad(). */
 {
 struct cdsPick *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->source);
 freeMem(el->swissProt);
 freeMem(el->uniProt);
 freeMem(el->refProt);
 freeMem(el->refSeq);
 freeMem(el->ccds);
 freez(pEl);
 }
 
 void cdsPickFreeList(struct cdsPick **pList)
 /* Free a list of dynamically allocated cdsPick's */
 {
 struct cdsPick *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     cdsPickFree(&el);
     }
 *pList = NULL;
 }
 
 void cdsPickOutput(struct cdsPick *el, FILE *f, char sep, char lastSep) 
 /* Print out cdsPick.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->start);
 fputc(sep,f);
 fprintf(f, "%d", el->end);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->source);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->score);
 fputc(sep,f);
 fprintf(f, "%u", el->startComplete);
 fputc(sep,f);
 fprintf(f, "%u", el->endComplete);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->swissProt);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->uniProt);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->refProt);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->refSeq);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->ccds);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */