e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/chainLink.c src/hg/lib/chainLink.c
index f221c48..07e7791 100644
--- src/hg/lib/chainLink.c
+++ src/hg/lib/chainLink.c
@@ -1,118 +1,121 @@
 /* chainLink.c was originally generated by the autoSql program, which also 
  * generated chainLink.h and chainLink.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "chain.h"
 #include "chainLink.h"
 
 
 void chainLinkStaticLoad(char **row, struct chainLink *ret)
 /* Load a row from chainLink table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->tName = row[0];
 ret->tStart = sqlUnsigned(row[1]);
 ret->tEnd = sqlUnsigned(row[2]);
 ret->qStart = sqlUnsigned(row[3]);
 ret->chainId = sqlUnsigned(row[4]);
 }
 
 struct chainLink *chainLinkLoad(char **row)
 /* Load a chainLink from row fetched with select * from chainLink
  * from database.  Dispose of this with chainLinkFree(). */
 {
 struct chainLink *ret;
 
 AllocVar(ret);
 ret->tName = cloneString(row[0]);
 ret->tStart = sqlUnsigned(row[1]);
 ret->tEnd = sqlUnsigned(row[2]);
 ret->qStart = sqlUnsigned(row[3]);
 ret->chainId = sqlUnsigned(row[4]);
 return ret;
 }
 
 struct chainLink *chainLinkLoadAll(char *fileName) 
 /* Load all chainLink from a tab-separated file.
  * Dispose of this with chainLinkFreeList(). */
 {
 struct chainLink *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = chainLinkLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct chainLink *chainLinkCommaIn(char **pS, struct chainLink *ret)
 /* Create a chainLink out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new chainLink */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->tName = sqlStringComma(&s);
 ret->tStart = sqlUnsignedComma(&s);
 ret->tEnd = sqlUnsignedComma(&s);
 ret->qStart = sqlUnsignedComma(&s);
 ret->chainId = sqlUnsignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void chainLinkFree(struct chainLink **pEl)
 /* Free a single dynamically allocated chainLink such as created
  * with chainLinkLoad(). */
 {
 struct chainLink *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->tName);
 freez(pEl);
 }
 
 void chainLinkFreeList(struct chainLink **pList)
 /* Free a list of dynamically allocated chainLink's */
 {
 struct chainLink *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     chainLinkFree(&el);
     }
 *pList = NULL;
 }
 
 void chainLinkOutput(struct chainLink *el, FILE *f, char sep, char lastSep) 
 /* Print out chainLink.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->tName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->tStart);
 fputc(sep,f);
 fprintf(f, "%u", el->tEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->qStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chainId);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */