e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/chicken13kInfo.c src/hg/lib/chicken13kInfo.c
index fb07056..7289dce 100644
--- src/hg/lib/chicken13kInfo.c
+++ src/hg/lib/chicken13kInfo.c
@@ -1,239 +1,242 @@
 /* chicken13kInfo.c was originally generated by the autoSql program, which also 
  * generated chicken13kInfo.h and chicken13kInfo.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "chicken13kInfo.h"
 
 
 void chicken13kInfoStaticLoad(char **row, struct chicken13kInfo *ret)
 /* Load a row from chicken13kInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->source = row[1];
 strcpy(ret->pcr, row[2]);
 ret->library = row[3];
 ret->clone = row[4];
 ret->gbkAcc = row[5];
 ret->blat = row[6];
 ret->sourceAnnot = row[7];
 ret->tigrTc = row[8];
 ret->tigrTcAnnot = row[9];
 ret->blastAnnot = row[10];
 ret->comment = row[11];
 }
 
 struct chicken13kInfo *chicken13kInfoLoad(char **row)
 /* Load a chicken13kInfo from row fetched with select * from chicken13kInfo
  * from database.  Dispose of this with chicken13kInfoFree(). */
 {
 struct chicken13kInfo *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->source = cloneString(row[1]);
 strcpy(ret->pcr, row[2]);
 ret->library = cloneString(row[3]);
 ret->clone = cloneString(row[4]);
 ret->gbkAcc = cloneString(row[5]);
 ret->blat = cloneString(row[6]);
 ret->sourceAnnot = cloneString(row[7]);
 ret->tigrTc = cloneString(row[8]);
 ret->tigrTcAnnot = cloneString(row[9]);
 ret->blastAnnot = cloneString(row[10]);
 ret->comment = cloneString(row[11]);
 return ret;
 }
 
 struct chicken13kInfo *chicken13kInfoLoadAll(char *fileName) 
 /* Load all chicken13kInfo from a whitespace-separated file.
  * Dispose of this with chicken13kInfoFreeList(). */
 {
 struct chicken13kInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileRow(lf, row))
     {
     el = chicken13kInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct chicken13kInfo *chicken13kInfoLoadAllByChar(char *fileName, char chopper) 
 /* Load all chicken13kInfo from a chopper separated file.
  * Dispose of this with chicken13kInfoFreeList(). */
 {
 struct chicken13kInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = chicken13kInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct chicken13kInfo *chicken13kInfoLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all chicken13kInfo from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with chicken13kInfoFreeList(). */
 {
 struct chicken13kInfo *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = chicken13kInfoLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void chicken13kInfoSaveToDb(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)
 /* Save chicken13kInfo as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s','%s',%s,'%s',%s,%s,%s)", 
 	tableName,  el->id,  el->source,  el->pcr,  el->library,  el->clone,  el->gbkAcc,  el->blat,  el->sourceAnnot,  el->tigrTc,  el->tigrTcAnnot,  el->blastAnnot,  el->comment);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct chicken13kInfo *chicken13kInfoCommaIn(char **pS, struct chicken13kInfo *ret)
 /* Create a chicken13kInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new chicken13kInfo */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->source = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->pcr, sizeof(ret->pcr));
 ret->library = sqlStringComma(&s);
 ret->clone = sqlStringComma(&s);
 ret->gbkAcc = sqlStringComma(&s);
 ret->blat = sqlStringComma(&s);
 ret->sourceAnnot = sqlStringComma(&s);
 ret->tigrTc = sqlStringComma(&s);
 ret->tigrTcAnnot = sqlStringComma(&s);
 ret->blastAnnot = sqlStringComma(&s);
 ret->comment = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void chicken13kInfoFree(struct chicken13kInfo **pEl)
 /* Free a single dynamically allocated chicken13kInfo such as created
  * with chicken13kInfoLoad(). */
 {
 struct chicken13kInfo *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->source);
 freeMem(el->library);
 freeMem(el->clone);
 freeMem(el->gbkAcc);
 freeMem(el->blat);
 freeMem(el->sourceAnnot);
 freeMem(el->tigrTc);
 freeMem(el->tigrTcAnnot);
 freeMem(el->blastAnnot);
 freeMem(el->comment);
 freez(pEl);
 }
 
 void chicken13kInfoFreeList(struct chicken13kInfo **pList)
 /* Free a list of dynamically allocated chicken13kInfo's */
 {
 struct chicken13kInfo *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     chicken13kInfoFree(&el);
     }
 *pList = NULL;
 }
 
 void chicken13kInfoOutput(struct chicken13kInfo *el, FILE *f, char sep, char lastSep) 
 /* Print out chicken13kInfo.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->source);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->pcr);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->library);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->clone);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->gbkAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->blat);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->sourceAnnot);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->tigrTc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->tigrTcAnnot);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->blastAnnot);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->comment);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */