e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/clonePos.c src/hg/lib/clonePos.c
index 69dd74c..1e9a278 100644
--- src/hg/lib/clonePos.c
+++ src/hg/lib/clonePos.c
@@ -1,158 +1,161 @@
 /* clonePos.c was originally generated by the autoSql program, which also 
  * generated clonePos.h and clonePos.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "clonePos.h"
 
 
 void clonePosStaticLoad(char **row, struct clonePos *ret)
 /* Load a row from clonePos table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->seqSize = sqlUnsigned(row[1]);
 ret->phase = sqlUnsigned(row[2]);
 ret->chrom = row[3];
 ret->chromStart = sqlUnsigned(row[4]);
 ret->chromEnd = sqlUnsigned(row[5]);
 safecpy(ret->stage, sizeof(ret->stage), row[6]);
 ret->faFile = row[7];
 }
 
 struct clonePos *clonePosLoad(char **row)
 /* Load a clonePos from row fetched with select * from clonePos
  * from database.  Dispose of this with clonePosFree(). */
 {
 struct clonePos *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->seqSize = sqlUnsigned(row[1]);
 ret->phase = sqlUnsigned(row[2]);
 ret->chrom = cloneString(row[3]);
 ret->chromStart = sqlUnsigned(row[4]);
 ret->chromEnd = sqlUnsigned(row[5]);
 safecpy(ret->stage, sizeof(ret->stage), row[6]);
 ret->faFile = cloneString(row[7]);
 return ret;
 }
 
 struct clonePos *clonePosLoadAll(char *fileName) 
 /* Load all clonePos from a whitespace-separated file.
  * Dispose of this with clonePosFreeList(). */
 {
 struct clonePos *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = clonePosLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct clonePos *clonePosLoadAllByChar(char *fileName, char chopper) 
 /* Load all clonePos from a chopper separated file.
  * Dispose of this with clonePosFreeList(). */
 {
 struct clonePos *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = clonePosLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct clonePos *clonePosCommaIn(char **pS, struct clonePos *ret)
 /* Create a clonePos out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new clonePos */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->seqSize = sqlUnsignedComma(&s);
 ret->phase = sqlUnsignedComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->stage, sizeof(ret->stage));
 ret->faFile = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void clonePosFree(struct clonePos **pEl)
 /* Free a single dynamically allocated clonePos such as created
  * with clonePosLoad(). */
 {
 struct clonePos *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->chrom);
 freeMem(el->faFile);
 freez(pEl);
 }
 
 void clonePosFreeList(struct clonePos **pList)
 /* Free a list of dynamically allocated clonePos's */
 {
 struct clonePos *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     clonePosFree(&el);
     }
 *pList = NULL;
 }
 
 void clonePosOutput(struct clonePos *el, FILE *f, char sep, char lastSep) 
 /* Print out clonePos.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->seqSize);
 fputc(sep,f);
 fprintf(f, "%u", el->phase);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->stage);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->faFile);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */