e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/cnpSharp.c src/hg/lib/cnpSharp.c
index bcb3df0..c3d9051 100644
--- src/hg/lib/cnpSharp.c
+++ src/hg/lib/cnpSharp.c
@@ -1,192 +1,195 @@
 /* cnpSharp.c was originally generated by the autoSql program, which also 
  * generated cnpSharp.h and cnpSharp.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "cnpSharp.h"
 
 
 void cnpSharpStaticLoad(char **row, struct cnpSharp *ret)
 /* Load a row from cnpSharp table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->variationType = row[4];
 ret->cytoName = row[5];
 ret->cytoStrain = row[6];
 ret->dupPercent = atof(row[7]);
 ret->repeatsPercent = atof(row[8]);
 ret->LINEpercent = atof(row[9]);
 ret->SINEpercent = atof(row[10]);
 ret->LTRpercent = atof(row[11]);
 ret->DNApercent = atof(row[12]);
 ret->diseaseSpotsPercent = atof(row[13]);
 }
 
 struct cnpSharp *cnpSharpLoad(char **row)
 /* Load a cnpSharp from row fetched with select * from cnpSharp
  * from database.  Dispose of this with cnpSharpFree(). */
 {
 struct cnpSharp *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->variationType = cloneString(row[4]);
 ret->cytoName = cloneString(row[5]);
 ret->cytoStrain = cloneString(row[6]);
 ret->dupPercent = atof(row[7]);
 ret->repeatsPercent = atof(row[8]);
 ret->LINEpercent = atof(row[9]);
 ret->SINEpercent = atof(row[10]);
 ret->LTRpercent = atof(row[11]);
 ret->DNApercent = atof(row[12]);
 ret->diseaseSpotsPercent = atof(row[13]);
 return ret;
 }
 
 struct cnpSharp *cnpSharpLoadAll(char *fileName) 
 /* Load all cnpSharp from a whitespace-separated file.
  * Dispose of this with cnpSharpFreeList(). */
 {
 struct cnpSharp *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileRow(lf, row))
     {
     el = cnpSharpLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cnpSharp *cnpSharpLoadAllByChar(char *fileName, char chopper) 
 /* Load all cnpSharp from a chopper separated file.
  * Dispose of this with cnpSharpFreeList(). */
 {
 struct cnpSharp *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = cnpSharpLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cnpSharp *cnpSharpCommaIn(char **pS, struct cnpSharp *ret)
 /* Create a cnpSharp out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cnpSharp */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->variationType = sqlStringComma(&s);
 ret->cytoName = sqlStringComma(&s);
 ret->cytoStrain = sqlStringComma(&s);
 ret->dupPercent = sqlFloatComma(&s);
 ret->repeatsPercent = sqlFloatComma(&s);
 ret->LINEpercent = sqlFloatComma(&s);
 ret->SINEpercent = sqlFloatComma(&s);
 ret->LTRpercent = sqlFloatComma(&s);
 ret->DNApercent = sqlFloatComma(&s);
 ret->diseaseSpotsPercent = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void cnpSharpFree(struct cnpSharp **pEl)
 /* Free a single dynamically allocated cnpSharp such as created
  * with cnpSharpLoad(). */
 {
 struct cnpSharp *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->variationType);
 freeMem(el->cytoName);
 freeMem(el->cytoStrain);
 freez(pEl);
 }
 
 void cnpSharpFreeList(struct cnpSharp **pList)
 /* Free a list of dynamically allocated cnpSharp's */
 {
 struct cnpSharp *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     cnpSharpFree(&el);
     }
 *pList = NULL;
 }
 
 void cnpSharpOutput(struct cnpSharp *el, FILE *f, char sep, char lastSep) 
 /* Print out cnpSharp.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->variationType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->cytoName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->cytoStrain);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->dupPercent);
 fputc(sep,f);
 fprintf(f, "%g", el->repeatsPercent);
 fputc(sep,f);
 fprintf(f, "%g", el->LINEpercent);
 fputc(sep,f);
 fprintf(f, "%g", el->SINEpercent);
 fputc(sep,f);
 fprintf(f, "%g", el->LTRpercent);
 fputc(sep,f);
 fprintf(f, "%g", el->DNApercent);
 fputc(sep,f);
 fprintf(f, "%g", el->diseaseSpotsPercent);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */