e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/cpgIsland.c src/hg/lib/cpgIsland.c
index 10cdacc..3477cbb 100644
--- src/hg/lib/cpgIsland.c
+++ src/hg/lib/cpgIsland.c
@@ -1,118 +1,121 @@
 /* cpgIsland.c was originally generated by the autoSql program, which also 
  * generated cpgIsland.h and cpgIsland.sql.  This module links the database and the RAM 
  * representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "jksql.h"
 #include "cpgIsland.h"
 
 
 void cpgIslandStaticLoad(char **row, struct cpgIsland *ret)
 /* Load a row from cpgIsland table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->length = sqlUnsigned(row[4]);
 ret->cpgNum = sqlUnsigned(row[5]);
 ret->gcNum = sqlUnsigned(row[6]);
 ret->perCpg = atof(row[7]);
 ret->perGc = atof(row[8]);
 }
 
 struct cpgIsland *cpgIslandLoad(char **row)
 /* Load a cpgIsland from row fetched with select * from cpgIsland
  * from database.  Dispose of this with cpgIslandFree(). */
 {
 struct cpgIsland *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->length = sqlUnsigned(row[4]);
 ret->cpgNum = sqlUnsigned(row[5]);
 ret->gcNum = sqlUnsigned(row[6]);
 ret->perCpg = atof(row[7]);
 ret->perGc = atof(row[8]);
 return ret;
 }
 
 struct cpgIsland *cpgIslandCommaIn(char **pS, struct cpgIsland *ret)
 /* Create a cpgIsland out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cpgIsland */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->length = sqlUnsignedComma(&s);
 ret->cpgNum = sqlUnsignedComma(&s);
 ret->gcNum = sqlUnsignedComma(&s);
 ret->perCpg = sqlSignedComma(&s);
 ret->perGc = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void cpgIslandFree(struct cpgIsland **pEl)
 /* Free a single dynamically allocated cpgIsland such as created
  * with cpgIslandLoad(). */
 {
 struct cpgIsland *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freez(pEl);
 }
 
 void cpgIslandFreeList(struct cpgIsland **pList)
 /* Free a list of dynamically allocated cpgIsland's */
 {
 struct cpgIsland *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     cpgIslandFree(&el);
     }
 *pList = NULL;
 }
 
 void cpgIslandOutput(struct cpgIsland *el, FILE *f, char sep, char lastSep) 
 /* Print out cpgIsland.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->length);
 fputc(sep,f);
 fprintf(f, "%u", el->cpgNum);
 fputc(sep,f);
 fprintf(f, "%u", el->gcNum);
 fputc(sep,f);
 fprintf(f, "%f", el->perCpg);
 fputc(sep,f);
 fprintf(f, "%f", el->perGc);
 fputc(lastSep,f);
 }