e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/dless.c src/hg/lib/dless.c
index 9686ee2..a272cb3 100644
--- src/hg/lib/dless.c
+++ src/hg/lib/dless.c
@@ -1,240 +1,243 @@
 /* dless.c was originally generated by the autoSql program, which also 
  * generated dless.h and dless.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "dless.h"
 
 
 void dlessStaticLoad(char **row, struct dless *ret)
 /* Load a row from dless table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = atof(row[4]);
 strcpy(ret->type, row[5]);
 ret->branch = row[6];
 ret->pConsSub = atof(row[7]);
 ret->pConsSup = atof(row[8]);
 ret->pConsSubCond = atof(row[9]);
 ret->pConsSupCond = atof(row[10]);
 strcpy(ret->condApprox, row[11]);
 ret->priorMeanSub = atof(row[12]);
 ret->priorVarSub = atof(row[13]);
 ret->priorMinSub = sqlUnsigned(row[14]);
 ret->priorMaxSub = sqlUnsigned(row[15]);
 ret->postMeanSub = atof(row[16]);
 ret->postVarSub = atof(row[17]);
 ret->priorMeanSup = atof(row[18]);
 ret->priorVarSup = atof(row[19]);
 ret->priorMinSup = sqlUnsigned(row[20]);
 ret->priorMaxSup = sqlUnsigned(row[21]);
 ret->postMeanSup = atof(row[22]);
 ret->postVarSup = atof(row[23]);
 }
 
 struct dless *dlessLoad(char **row)
 /* Load a dless from row fetched with select * from dless
  * from database.  Dispose of this with dlessFree(). */
 {
 struct dless *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = atof(row[4]);
 strcpy(ret->type, row[5]);
 ret->branch = cloneString(row[6]);
 ret->pConsSub = atof(row[7]);
 ret->pConsSup = atof(row[8]);
 ret->pConsSubCond = atof(row[9]);
 ret->pConsSupCond = atof(row[10]);
 strcpy(ret->condApprox, row[11]);
 ret->priorMeanSub = atof(row[12]);
 ret->priorVarSub = atof(row[13]);
 ret->priorMinSub = sqlUnsigned(row[14]);
 ret->priorMaxSub = sqlUnsigned(row[15]);
 ret->postMeanSub = atof(row[16]);
 ret->postVarSub = atof(row[17]);
 ret->priorMeanSup = atof(row[18]);
 ret->priorVarSup = atof(row[19]);
 ret->priorMinSup = sqlUnsigned(row[20]);
 ret->priorMaxSup = sqlUnsigned(row[21]);
 ret->postMeanSup = atof(row[22]);
 ret->postVarSup = atof(row[23]);
 return ret;
 }
 
 struct dless *dlessLoadAll(char *fileName) 
 /* Load all dless from a whitespace-separated file.
  * Dispose of this with dlessFreeList(). */
 {
 struct dless *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[24];
 
 while (lineFileRow(lf, row))
     {
     el = dlessLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct dless *dlessLoadAllByChar(char *fileName, char chopper) 
 /* Load all dless from a chopper separated file.
  * Dispose of this with dlessFreeList(). */
 {
 struct dless *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[24];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = dlessLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct dless *dlessCommaIn(char **pS, struct dless *ret)
 /* Create a dless out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new dless */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlFloatComma(&s);
 sqlFixedStringComma(&s, ret->type, sizeof(ret->type));
 ret->branch = sqlStringComma(&s);
 ret->pConsSub = sqlFloatComma(&s);
 ret->pConsSup = sqlFloatComma(&s);
 ret->pConsSubCond = sqlFloatComma(&s);
 ret->pConsSupCond = sqlFloatComma(&s);
 sqlFixedStringComma(&s, ret->condApprox, sizeof(ret->condApprox));
 ret->priorMeanSub = sqlFloatComma(&s);
 ret->priorVarSub = sqlFloatComma(&s);
 ret->priorMinSub = sqlUnsignedComma(&s);
 ret->priorMaxSub = sqlUnsignedComma(&s);
 ret->postMeanSub = sqlFloatComma(&s);
 ret->postVarSub = sqlFloatComma(&s);
 ret->priorMeanSup = sqlFloatComma(&s);
 ret->priorVarSup = sqlFloatComma(&s);
 ret->priorMinSup = sqlUnsignedComma(&s);
 ret->priorMaxSup = sqlUnsignedComma(&s);
 ret->postMeanSup = sqlFloatComma(&s);
 ret->postVarSup = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void dlessFree(struct dless **pEl)
 /* Free a single dynamically allocated dless such as created
  * with dlessLoad(). */
 {
 struct dless *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->branch);
 freez(pEl);
 }
 
 void dlessFreeList(struct dless **pList)
 /* Free a list of dynamically allocated dless's */
 {
 struct dless *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     dlessFree(&el);
     }
 *pList = NULL;
 }
 
 void dlessOutput(struct dless *el, FILE *f, char sep, char lastSep) 
 /* Print out dless.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->branch);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->pConsSub);
 fputc(sep,f);
 fprintf(f, "%g", el->pConsSup);
 fputc(sep,f);
 fprintf(f, "%g", el->pConsSubCond);
 fputc(sep,f);
 fprintf(f, "%g", el->pConsSupCond);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->condApprox);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->priorMeanSub);
 fputc(sep,f);
 fprintf(f, "%g", el->priorVarSub);
 fputc(sep,f);
 fprintf(f, "%u", el->priorMinSub);
 fputc(sep,f);
 fprintf(f, "%u", el->priorMaxSub);
 fputc(sep,f);
 fprintf(f, "%g", el->postMeanSub);
 fputc(sep,f);
 fprintf(f, "%g", el->postVarSub);
 fputc(sep,f);
 fprintf(f, "%g", el->priorMeanSup);
 fputc(sep,f);
 fprintf(f, "%g", el->priorVarSup);
 fputc(sep,f);
 fprintf(f, "%u", el->priorMinSup);
 fputc(sep,f);
 fprintf(f, "%u", el->priorMaxSup);
 fputc(sep,f);
 fprintf(f, "%g", el->postMeanSup);
 fputc(sep,f);
 fprintf(f, "%g", el->postVarSup);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */