e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/dnaMotifSql.c src/hg/lib/dnaMotifSql.c
index cb89dac..ce07467 100644
--- src/hg/lib/dnaMotifSql.c
+++ src/hg/lib/dnaMotifSql.c
@@ -1,76 +1,79 @@
 /* dnaMotifSql.c was originally generated by the autoSql program, which also 
  * generated dnaMotifSql.h and dnaMotifSql.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "dnaMotif.h"
 #include "dnaMotifSql.h"
 #include "dystring.h"
 
 
 struct dnaMotif *dnaMotifLoad(char **row)
 /* Load a dnaMotif from row fetched with select * from dnaMotif
  * from database.  Dispose of this with dnaMotifFree(). */
 {
 struct dnaMotif *ret;
 int sizeOne;
 
 AllocVar(ret);
 ret->columnCount = sqlSigned(row[1]);
 ret->name = cloneString(row[0]);
 sqlFloatDynamicArray(row[2], &ret->aProb, &sizeOne);
 assert(sizeOne == ret->columnCount);
 sqlFloatDynamicArray(row[3], &ret->cProb, &sizeOne);
 assert(sizeOne == ret->columnCount);
 sqlFloatDynamicArray(row[4], &ret->gProb, &sizeOne);
 assert(sizeOne == ret->columnCount);
 sqlFloatDynamicArray(row[5], &ret->tProb, &sizeOne);
 assert(sizeOne == ret->columnCount);
 return ret;
 }
 
 struct dnaMotif *dnaMotifLoadAll(char *fileName) 
 /* Load all dnaMotif from a tab-separated file.
  * Dispose of this with dnaMotifFreeList(). */
 {
 struct dnaMotif *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = dnaMotifLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct dnaMotif *dnaMotifLoadWhere(struct sqlConnection *conn, char *table, char *where)
 /* Load all dnaMotif from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with dnaMotifFreeList(). */
 {
 struct dnaMotif *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 sqlDyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = dnaMotifLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }