e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/estPair.c src/hg/lib/estPair.c
index 9207167..255b949 100644
--- src/hg/lib/estPair.c
+++ src/hg/lib/estPair.c
@@ -1,148 +1,151 @@
 /* estPair.c was originally generated by the autoSql program, which also 
  * generated estPair.h and estPair.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "estPair.h"
 
 
 void estPairStaticLoad(char **row, struct estPair *ret)
 /* Load a row from estPair table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->mrnaClone = row[3];
 ret->acc5 = row[4];
 ret->start5 = sqlUnsigned(row[5]);
 ret->end5 = sqlUnsigned(row[6]);
 ret->acc3 = row[7];
 ret->start3 = sqlUnsigned(row[8]);
 ret->end3 = sqlUnsigned(row[9]);
 }
 
 struct estPair *estPairLoad(char **row)
 /* Load a estPair from row fetched with select * from estPair
  * from database.  Dispose of this with estPairFree(). */
 {
 struct estPair *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->mrnaClone = cloneString(row[3]);
 ret->acc5 = cloneString(row[4]);
 ret->start5 = sqlUnsigned(row[5]);
 ret->end5 = sqlUnsigned(row[6]);
 ret->acc3 = cloneString(row[7]);
 ret->start3 = sqlUnsigned(row[8]);
 ret->end3 = sqlUnsigned(row[9]);
 return ret;
 }
 
 struct estPair *estPairLoadAll(char *fileName) 
 /* Load all estPair from a tab-separated file.
  * Dispose of this with estPairFreeList(). */
 {
 struct estPair *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[10];
 
 while (lineFileRow(lf, row))
     {
     el = estPairLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct estPair *estPairCommaIn(char **pS, struct estPair *ret)
 /* Create a estPair out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new estPair */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->mrnaClone = sqlStringComma(&s);
 ret->acc5 = sqlStringComma(&s);
 ret->start5 = sqlUnsignedComma(&s);
 ret->end5 = sqlUnsignedComma(&s);
 ret->acc3 = sqlStringComma(&s);
 ret->start3 = sqlUnsignedComma(&s);
 ret->end3 = sqlUnsignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void estPairFree(struct estPair **pEl)
 /* Free a single dynamically allocated estPair such as created
  * with estPairLoad(). */
 {
 struct estPair *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->mrnaClone);
 freeMem(el->acc5);
 freeMem(el->acc3);
 freez(pEl);
 }
 
 void estPairFreeList(struct estPair **pList)
 /* Free a list of dynamically allocated estPair's */
 {
 struct estPair *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     estPairFree(&el);
     }
 *pList = NULL;
 }
 
 void estPairOutput(struct estPair *el, FILE *f, char sep, char lastSep) 
 /* Print out estPair.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mrnaClone);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->acc5);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->start5);
 fputc(sep,f);
 fprintf(f, "%u", el->end5);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->acc3);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->start3);
 fputc(sep,f);
 fprintf(f, "%u", el->end3);
 fputc(lastSep,f);
 }