e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/exprBed.c src/hg/lib/exprBed.c
index 5a05403..7fb6ef6 100644
--- src/hg/lib/exprBed.c
+++ src/hg/lib/exprBed.c
@@ -1,173 +1,176 @@
 /* exprBed.c was originally generated by the autoSql program, which also 
  * generated exprBed.h and exprBed.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "exprBed.h"
 
 
 struct exprBed *exprBedLoad(char **row)
 /* Load a exprBed from row fetched with select * from exprBed
  * from database.  Dispose of this with exprBedFree(). */
 {
 struct exprBed *ret;
 int sizeOne;
 
 AllocVar(ret);
 ret->numExp = sqlUnsigned(row[8]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->size = sqlUnsigned(row[4]);
 ret->uniqueAlign = sqlUnsigned(row[5]);
 ret->score = sqlUnsigned(row[6]);
 ret->hname = cloneString(row[7]);
 sqlStringDynamicArray(row[9], &ret->hybes, &sizeOne);
 assert(sizeOne == ret->numExp);
 sqlFloatDynamicArray(row[10], &ret->scores, &sizeOne);
 assert(sizeOne == ret->numExp);
 return ret;
 }
 
 struct exprBed *exprBedLoadAll(char *fileName) 
 /* Load all exprBed from a tab-separated file.
  * Dispose of this with exprBedFreeList(). */
 {
 struct exprBed *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[11];
 
 while (lineFileRow(lf, row))
     {
     el = exprBedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct exprBed *exprBedCommaIn(char **pS, struct exprBed *ret)
 /* Create a exprBed out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new exprBed */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->size = sqlUnsignedComma(&s);
 ret->uniqueAlign = sqlUnsignedComma(&s);
 ret->score = sqlUnsignedComma(&s);
 ret->hname = sqlStringComma(&s);
 ret->numExp = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->hybes, ret->numExp);
 for (i=0; i<ret->numExp; ++i)
     {
     ret->hybes[i] = sqlStringComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 s = sqlEatChar(s, '{');
 AllocArray(ret->scores, ret->numExp);
 for (i=0; i<ret->numExp; ++i)
     {
     ret->scores[i] = sqlFloatComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 *pS = s;
 return ret;
 }
 
 void exprBedFree(struct exprBed **pEl)
 /* Free a single dynamically allocated exprBed such as created
  * with exprBedLoad(). */
 {
 struct exprBed *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->hname);
 /* All strings in hybes are allocated at once, so only need to free first. */
 if (el->hybes != NULL)
     freeMem(el->hybes[0]);
 freeMem(el->hybes);
 freeMem(el->scores);
 freez(pEl);
 }
 
 void exprBedFreeList(struct exprBed **pList)
 /* Free a list of dynamically allocated exprBed's */
 {
 struct exprBed *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     exprBedFree(&el);
     }
 *pList = NULL;
 }
 
 void exprBedOutput(struct exprBed *el, FILE *f, char sep, char lastSep) 
 /* Print out exprBed.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->size);
 fputc(sep,f);
 fprintf(f, "%u", el->uniqueAlign);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->hname);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->numExp);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->numExp; ++i)
     {
     if (sep == ',') fputc('"',f);
     fprintf(f, "%s", el->hybes[i]);
     if (sep == ',') fputc('"',f);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->numExp; ++i)
     {
     fprintf(f, "%f", el->scores[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */