e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/gencodeGeneClass.c src/hg/lib/gencodeGeneClass.c
index 8de3187..a614b63 100644
--- src/hg/lib/gencodeGeneClass.c
+++ src/hg/lib/gencodeGeneClass.c
@@ -1,160 +1,163 @@
 /* gencodeGeneClass.c was originally generated by the autoSql program, which also 
  * generated gencodeGeneClass.h and gencodeGeneClass.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "gencodeGeneClass.h"
 
 
 void gencodeGeneClassStaticLoad(char **row, struct gencodeGeneClass *ret)
 /* Load a row from gencodeGeneClass table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->geneId = row[0];
 ret->name = row[1];
 ret->transcriptType = row[2];
 ret->level = sqlSigned(row[3]);
 ret->class = row[4];
 ret->ottGeneId = row[5];
 ret->ottTranscriptId = row[6];
 }
 
 struct gencodeGeneClass *gencodeGeneClassLoad(char **row)
 /* Load a gencodeGeneClass from row fetched with select * from gencodeGeneClass
  * from database.  Dispose of this with gencodeGeneClassFree(). */
 {
 struct gencodeGeneClass *ret;
 
 AllocVar(ret);
 ret->geneId = cloneString(row[0]);
 ret->name = cloneString(row[1]);
 ret->transcriptType = cloneString(row[2]);
 ret->level = sqlSigned(row[3]);
 ret->class = cloneString(row[4]);
 ret->ottGeneId = cloneString(row[5]);
 ret->ottTranscriptId = cloneString(row[6]);
 return ret;
 }
 
 struct gencodeGeneClass *gencodeGeneClassLoadAll(char *fileName) 
 /* Load all gencodeGeneClass from a whitespace-separated file.
  * Dispose of this with gencodeGeneClassFreeList(). */
 {
 struct gencodeGeneClass *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = gencodeGeneClassLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gencodeGeneClass *gencodeGeneClassLoadAllByChar(char *fileName, char chopper) 
 /* Load all gencodeGeneClass from a chopper separated file.
  * Dispose of this with gencodeGeneClassFreeList(). */
 {
 struct gencodeGeneClass *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gencodeGeneClassLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gencodeGeneClass *gencodeGeneClassCommaIn(char **pS, struct gencodeGeneClass *ret)
 /* Create a gencodeGeneClass out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gencodeGeneClass */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->geneId = sqlStringComma(&s);
 ret->name = sqlStringComma(&s);
 ret->transcriptType = sqlStringComma(&s);
 ret->level = sqlSignedComma(&s);
 ret->class = sqlStringComma(&s);
 ret->ottGeneId = sqlStringComma(&s);
 ret->ottTranscriptId = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gencodeGeneClassFree(struct gencodeGeneClass **pEl)
 /* Free a single dynamically allocated gencodeGeneClass such as created
  * with gencodeGeneClassLoad(). */
 {
 struct gencodeGeneClass *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->geneId);
 freeMem(el->name);
 freeMem(el->transcriptType);
 freeMem(el->class);
 freeMem(el->ottGeneId);
 freeMem(el->ottTranscriptId);
 freez(pEl);
 }
 
 void gencodeGeneClassFreeList(struct gencodeGeneClass **pList)
 /* Free a list of dynamically allocated gencodeGeneClass's */
 {
 struct gencodeGeneClass *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gencodeGeneClassFree(&el);
     }
 *pList = NULL;
 }
 
 void gencodeGeneClassOutput(struct gencodeGeneClass *el, FILE *f, char sep, char lastSep) 
 /* Print out gencodeGeneClass.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->transcriptType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->level);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->class);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->ottGeneId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->ottTranscriptId);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */