e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/gv.c src/hg/lib/gv.c
index 7c7f720..dff6b74 100644
--- src/hg/lib/gv.c
+++ src/hg/lib/gv.c
@@ -1,1005 +1,1008 @@
 /* gv.c was originally generated by the autoSql program, which also 
  * generated gv.h and gv.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "gv.h"
 
 
 void gvStaticLoad(char **row, struct gv *ret)
 /* Load a row from gv table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->name = row[1];
 ret->srcId = row[2];
 ret->baseChangeType = row[3];
 ret->location = row[4];
 ret->coordinateAccuracy = sqlUnsigned(row[5]);
 }
 
 struct gv *gvLoad(char **row)
 /* Load a gv from row fetched with select * from gv
  * from database.  Dispose of this with gvFree(). */
 {
 struct gv *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->name = cloneString(row[1]);
 ret->srcId = cloneString(row[2]);
 ret->baseChangeType = cloneString(row[3]);
 ret->location = cloneString(row[4]);
 ret->coordinateAccuracy = sqlUnsigned(row[5]);
 return ret;
 }
 
 struct gv *gvLoadAll(char *fileName) 
 /* Load all gv from a whitespace-separated file.
  * Dispose of this with gvFreeList(). */
 {
 struct gv *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = gvLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gv *gvLoadAllByChar(char *fileName, char chopper) 
 /* Load all gv from a chopper separated file.
  * Dispose of this with gvFreeList(). */
 {
 struct gv *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gv *gvLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gv from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvFreeList(). */
 {
 struct gv *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvSaveToDb(struct sqlConnection *conn, struct gv *el, char *tableName, int updateSize)
 /* Save gv as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s',%u)", 
 	tableName,  el->id,  el->name,  el->srcId,  el->baseChangeType,  el->location,  el->coordinateAccuracy);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gv *gvCommaIn(char **pS, struct gv *ret)
 /* Create a gv out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gv */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->name = sqlStringComma(&s);
 ret->srcId = sqlStringComma(&s);
 ret->baseChangeType = sqlStringComma(&s);
 ret->location = sqlStringComma(&s);
 ret->coordinateAccuracy = sqlUnsignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvFree(struct gv **pEl)
 /* Free a single dynamically allocated gv such as created
  * with gvLoad(). */
 {
 struct gv *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->name);
 freeMem(el->srcId);
 freeMem(el->baseChangeType);
 freeMem(el->location);
 freez(pEl);
 }
 
 void gvFreeList(struct gv **pList)
 /* Free a list of dynamically allocated gv's */
 {
 struct gv *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvFree(&el);
     }
 *pList = NULL;
 }
 
 void gvOutput(struct gv *el, FILE *f, char sep, char lastSep) 
 /* Print out gv.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->baseChangeType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->location);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->coordinateAccuracy);
 fputc(lastSep,f);
 }
 
 void gvPosStaticLoad(char **row, struct gvPos *ret)
 /* Load a row from gvPos table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->bin = sqlUnsigned(row[0]);
 ret->chrom = row[1];
 ret->chromStart = sqlUnsigned(row[2]);
 ret->chromEnd = sqlUnsigned(row[3]);
 ret->name = row[4];
 ret->id = NULL;
 strcpy(ret->strand, row[5]);
 ret->label = row[6];
 }
 
 struct gvPos *gvPosLoad(char **row)
 /* Load a gvPos from row fetched with select * from gvPos
  * from database.  Dispose of this with gvPosFree(). */
 {
 struct gvPos *ret;
 
 AllocVar(ret);
 ret->bin = sqlUnsigned(row[0]);
 ret->chrom = cloneString(row[1]);
 ret->chromStart = sqlUnsigned(row[2]);
 ret->chromEnd = sqlUnsigned(row[3]);
 ret->name = cloneString(row[4]);
 ret->id = NULL;
 strcpy(ret->strand, row[5]);
 ret->label = cloneString(row[6]);
 return ret;
 }
 
 struct gvPos *gvPosLoadAll(char *fileName) 
 /* Load all gvPos from a whitespace-separated file.
  * Dispose of this with gvPosFreeList(). */
 {
 struct gvPos *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = gvPosLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvPos *gvPosLoadAllByChar(char *fileName, char chopper) 
 /* Load all gvPos from a chopper separated file.
  * Dispose of this with gvPosFreeList(). */
 {
 struct gvPos *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvPosLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvPos *gvPosLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gvPos from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvPosFreeList(). */
 {
 struct gvPos *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvPosLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvPosSaveToDb(struct sqlConnection *conn, struct gvPos *el, char *tableName, int updateSize)
 /* Save gvPos as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( %u,'%s',%u,%u,'%s','%s','%s')", 
 	tableName,  el->bin,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->strand,  el->label);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gvPos *gvPosCommaIn(char **pS, struct gvPos *ret)
 /* Create a gvPos out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gvPos */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->bin = sqlUnsignedComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->label = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvPosFree(struct gvPos **pEl)
 /* Free a single dynamically allocated gvPos such as created
  * with gvPosLoad(). */
 {
 struct gvPos *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->label);
 freeMem(el->id);
 freez(pEl);
 }
 
 void gvPosFreeList(struct gvPos **pList)
 /* Free a list of dynamically allocated gvPos's */
 {
 struct gvPos *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvPosFree(&el);
     }
 *pList = NULL;
 }
 
 void gvPosOutput(struct gvPos *el, FILE *f, char sep, char lastSep) 
 /* Print out gvPos.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%u", el->bin);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->label);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 void gvSrcStaticLoad(char **row, struct gvSrc *ret)
 /* Load a row from gvSrc table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->srcId = row[0];
 ret->src = row[1];
 ret->lsdb = row[2];
 }
 
 struct gvSrc *gvSrcLoad(char **row)
 /* Load a gvSrc from row fetched with select * from gvSrc
  * from database.  Dispose of this with gvSrcFree(). */
 {
 struct gvSrc *ret;
 
 AllocVar(ret);
 ret->srcId = cloneString(row[0]);
 ret->src = cloneString(row[1]);
 ret->lsdb = cloneString(row[2]);
 return ret;
 }
 
 struct gvSrc *gvSrcLoadAll(char *fileName) 
 /* Load all gvSrc from a whitespace-separated file.
  * Dispose of this with gvSrcFreeList(). */
 {
 struct gvSrc *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = gvSrcLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvSrc *gvSrcLoadAllByChar(char *fileName, char chopper) 
 /* Load all gvSrc from a chopper separated file.
  * Dispose of this with gvSrcFreeList(). */
 {
 struct gvSrc *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvSrcLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvSrc *gvSrcLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gvSrc from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvSrcFreeList(). */
 {
 struct gvSrc *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvSrcLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvSrcSaveToDb(struct sqlConnection *conn, struct gvSrc *el, char *tableName, int updateSize)
 /* Save gvSrc as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s')", 
 	tableName,  el->srcId,  el->src,  el->lsdb);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gvSrc *gvSrcCommaIn(char **pS, struct gvSrc *ret)
 /* Create a gvSrc out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gvSrc */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->srcId = sqlStringComma(&s);
 ret->src = sqlStringComma(&s);
 ret->lsdb = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvSrcFree(struct gvSrc **pEl)
 /* Free a single dynamically allocated gvSrc such as created
  * with gvSrcLoad(). */
 {
 struct gvSrc *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->srcId);
 freeMem(el->src);
 freeMem(el->lsdb);
 freez(pEl);
 }
 
 void gvSrcFreeList(struct gvSrc **pList)
 /* Free a list of dynamically allocated gvSrc's */
 {
 struct gvSrc *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvSrcFree(&el);
     }
 *pList = NULL;
 }
 
 void gvSrcOutput(struct gvSrc *el, FILE *f, char sep, char lastSep) 
 /* Print out gvSrc.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->src);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->lsdb);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 void gvAttrStaticLoad(char **row, struct gvAttr *ret)
 /* Load a row from gvAttr table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->attrType = row[1];
 ret->attrVal = row[2];
 }
 
 struct gvAttr *gvAttrLoad(char **row)
 /* Load a gvAttr from row fetched with select * from gvAttr
  * from database.  Dispose of this with gvAttrFree(). */
 {
 struct gvAttr *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->attrType = cloneString(row[1]);
 ret->attrVal = cloneString(row[2]);
 return ret;
 }
 
 struct gvAttr *gvAttrLoadAll(char *fileName) 
 /* Load all gvAttr from a whitespace-separated file.
  * Dispose of this with gvAttrFreeList(). */
 {
 struct gvAttr *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = gvAttrLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvAttr *gvAttrLoadAllByChar(char *fileName, char chopper) 
 /* Load all gvAttr from a chopper separated file.
  * Dispose of this with gvAttrFreeList(). */
 {
 struct gvAttr *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvAttrLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvAttr *gvAttrLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gvAttr from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvAttrFreeList(). */
 {
 struct gvAttr *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvAttrLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvAttrSaveToDb(struct sqlConnection *conn, struct gvAttr *el, char *tableName, int updateSize)
 /* Save gvAttr as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s')", 
 	tableName,  el->id,  el->attrType,  el->attrVal);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gvAttr *gvAttrCommaIn(char **pS, struct gvAttr *ret)
 /* Create a gvAttr out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gvAttr */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->attrType = sqlStringComma(&s);
 ret->attrVal = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvAttrFree(struct gvAttr **pEl)
 /* Free a single dynamically allocated gvAttr such as created
  * with gvAttrLoad(). */
 {
 struct gvAttr *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->attrType);
 freeMem(el->attrVal);
 freez(pEl);
 }
 
 void gvAttrFreeList(struct gvAttr **pList)
 /* Free a list of dynamically allocated gvAttr's */
 {
 struct gvAttr *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvAttrFree(&el);
     }
 *pList = NULL;
 }
 
 void gvAttrOutput(struct gvAttr *el, FILE *f, char sep, char lastSep) 
 /* Print out gvAttr.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->attrType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->attrVal);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 void gvLinkStaticLoad(char **row, struct gvLink *ret)
 /* Load a row from gvLink table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->attrType = row[1];
 ret->raKey = row[2];
 ret->acc = row[3];
 ret->displayVal = row[4];
 }
 
 struct gvLink *gvLinkLoad(char **row)
 /* Load a gvLink from row fetched with select * from gvLink
  * from database.  Dispose of this with gvLinkFree(). */
 {
 struct gvLink *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->attrType = cloneString(row[1]);
 ret->raKey = cloneString(row[2]);
 ret->acc = cloneString(row[3]);
 ret->displayVal = cloneString(row[4]);
 return ret;
 }
 
 struct gvLink *gvLinkLoadAll(char *fileName) 
 /* Load all gvLink from a whitespace-separated file.
  * Dispose of this with gvLinkFreeList(). */
 {
 struct gvLink *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = gvLinkLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvLink *gvLinkLoadAllByChar(char *fileName, char chopper) 
 /* Load all gvLink from a chopper separated file.
  * Dispose of this with gvLinkFreeList(). */
 {
 struct gvLink *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvLinkLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvLink *gvLinkLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gvLink from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvLinkFreeList(). */
 {
 struct gvLink *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvLinkLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvLinkSaveToDb(struct sqlConnection *conn, struct gvLink *el, char *tableName, int updateSize)
 /* Save gvLink as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s')", 
 	tableName,  el->id,  el->attrType,  el->raKey,  el->acc,  el->displayVal);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gvLink *gvLinkCommaIn(char **pS, struct gvLink *ret)
 /* Create a gvLink out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gvLink */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->attrType = sqlStringComma(&s);
 ret->raKey = sqlStringComma(&s);
 ret->acc = sqlStringComma(&s);
 ret->displayVal = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvLinkFree(struct gvLink **pEl)
 /* Free a single dynamically allocated gvLink such as created
  * with gvLinkLoad(). */
 {
 struct gvLink *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->attrType);
 freeMem(el->raKey);
 freeMem(el->acc);
 freeMem(el->displayVal);
 freez(pEl);
 }
 
 void gvLinkFreeList(struct gvLink **pList)
 /* Free a list of dynamically allocated gvLink's */
 {
 struct gvLink *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvLinkFree(&el);
     }
 *pList = NULL;
 }
 
 void gvLinkOutput(struct gvLink *el, FILE *f, char sep, char lastSep) 
 /* Print out gvLink.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->attrType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->raKey);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->acc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->displayVal);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 void gvAttrLongStaticLoad(char **row, struct gvAttrLong *ret)
 /* Load a row from gvAttrLong table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->attrType = row[1];
 ret->attrVal = row[2];
 }
 
 struct gvAttrLong *gvAttrLongLoad(char **row)
 /* Load a gvAttrLong from row fetched with select * from gvAttrLong
  * from database.  Dispose of this with gvAttrLongFree(). */
 {
 struct gvAttrLong *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->attrType = cloneString(row[1]);
 ret->attrVal = cloneString(row[2]);
 return ret;
 }
 
 struct gvAttrLong *gvAttrLongLoadAll(char *fileName) 
 /* Load all gvAttrLong from a whitespace-separated file.
  * Dispose of this with gvAttrLongFreeList(). */
 {
 struct gvAttrLong *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = gvAttrLongLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvAttrLong *gvAttrLongLoadAllByChar(char *fileName, char chopper) 
 /* Load all gvAttrLong from a chopper separated file.
  * Dispose of this with gvAttrLongFreeList(). */
 {
 struct gvAttrLong *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = gvAttrLongLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct gvAttrLong *gvAttrLongLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all gvAttrLong from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gvAttrLongFreeList(). */
 {
 struct gvAttrLong *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = gvAttrLongLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void gvAttrLongSaveToDb(struct sqlConnection *conn, struct gvAttrLong *el, char *tableName, int updateSize)
 /* Save gvAttrLong as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s',%s)", 
 	tableName,  el->id,  el->attrType,  el->attrVal);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct gvAttrLong *gvAttrLongCommaIn(char **pS, struct gvAttrLong *ret)
 /* Create a gvAttrLong out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gvAttrLong */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->attrType = sqlStringComma(&s);
 ret->attrVal = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void gvAttrLongFree(struct gvAttrLong **pEl)
 /* Free a single dynamically allocated gvAttrLong such as created
  * with gvAttrLongLoad(). */
 {
 struct gvAttrLong *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->attrType);
 freeMem(el->attrVal);
 freez(pEl);
 }
 
 void gvAttrLongFreeList(struct gvAttrLong **pList)
 /* Free a list of dynamically allocated gvAttrLong's */
 {
 struct gvAttrLong *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     gvAttrLongFree(&el);
     }
 *pList = NULL;
 }
 
 void gvAttrLongOutput(struct gvAttrLong *el, FILE *f, char sep, char lastSep) 
 /* Print out gvAttrLong.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->attrType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->attrVal);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */