e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/hapmapAllelesCombined.c src/hg/lib/hapmapAllelesCombined.c
index 24773b2..00c6202 100644
--- src/hg/lib/hapmapAllelesCombined.c
+++ src/hg/lib/hapmapAllelesCombined.c
@@ -1,228 +1,231 @@
 /* hapmapAllelesCombined.c was originally generated by the autoSql program, which also 
  * generated hapmapAllelesCombined.h and hapmapAllelesCombined.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "hapmapAllelesCombined.h"
 
 
 void hapmapAllelesCombinedStaticLoad(char **row, struct hapmapAllelesCombined *ret)
 /* Load a row from hapmapAllelesCombined table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->observed = row[6];
 safecpy(ret->allele1, sizeof(ret->allele1), row[7]);
 ret->allele1CountCEU = sqlUnsigned(row[8]);
 ret->allele1CountCHB = sqlUnsigned(row[9]);
 ret->allele1CountJPT = sqlUnsigned(row[10]);
 ret->allele1CountYRI = sqlUnsigned(row[11]);
 ret->allele2 = row[12];
 ret->allele2CountCEU = sqlUnsigned(row[13]);
 ret->allele2CountCHB = sqlUnsigned(row[14]);
 ret->allele2CountJPT = sqlUnsigned(row[15]);
 ret->allele2CountYRI = sqlUnsigned(row[16]);
 ret->heteroCountCEU = sqlUnsigned(row[17]);
 ret->heteroCountCHB = sqlUnsigned(row[18]);
 ret->heteroCountJPT = sqlUnsigned(row[19]);
 ret->heteroCountYRI = sqlUnsigned(row[20]);
 }
 
 struct hapmapAllelesCombined *hapmapAllelesCombinedLoad(char **row)
 /* Load a hapmapAllelesCombined from row fetched with select * from hapmapAllelesCombined
  * from database.  Dispose of this with hapmapAllelesCombinedFree(). */
 {
 struct hapmapAllelesCombined *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->observed = cloneString(row[6]);
 safecpy(ret->allele1, sizeof(ret->allele1), row[7]);
 ret->allele1CountCEU = sqlUnsigned(row[8]);
 ret->allele1CountCHB = sqlUnsigned(row[9]);
 ret->allele1CountJPT = sqlUnsigned(row[10]);
 ret->allele1CountYRI = sqlUnsigned(row[11]);
 ret->allele2 = cloneString(row[12]);
 ret->allele2CountCEU = sqlUnsigned(row[13]);
 ret->allele2CountCHB = sqlUnsigned(row[14]);
 ret->allele2CountJPT = sqlUnsigned(row[15]);
 ret->allele2CountYRI = sqlUnsigned(row[16]);
 ret->heteroCountCEU = sqlUnsigned(row[17]);
 ret->heteroCountCHB = sqlUnsigned(row[18]);
 ret->heteroCountJPT = sqlUnsigned(row[19]);
 ret->heteroCountYRI = sqlUnsigned(row[20]);
 return ret;
 }
 
 struct hapmapAllelesCombined *hapmapAllelesCombinedLoadAll(char *fileName) 
 /* Load all hapmapAllelesCombined from a whitespace-separated file.
  * Dispose of this with hapmapAllelesCombinedFreeList(). */
 {
 struct hapmapAllelesCombined *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[21];
 
 while (lineFileRow(lf, row))
     {
     el = hapmapAllelesCombinedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct hapmapAllelesCombined *hapmapAllelesCombinedLoadAllByChar(char *fileName, char chopper) 
 /* Load all hapmapAllelesCombined from a chopper separated file.
  * Dispose of this with hapmapAllelesCombinedFreeList(). */
 {
 struct hapmapAllelesCombined *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[21];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = hapmapAllelesCombinedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct hapmapAllelesCombined *hapmapAllelesCombinedCommaIn(char **pS, struct hapmapAllelesCombined *ret)
 /* Create a hapmapAllelesCombined out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapAllelesCombined */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->observed = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->allele1, sizeof(ret->allele1));
 ret->allele1CountCEU = sqlUnsignedComma(&s);
 ret->allele1CountCHB = sqlUnsignedComma(&s);
 ret->allele1CountJPT = sqlUnsignedComma(&s);
 ret->allele1CountYRI = sqlUnsignedComma(&s);
 ret->allele2 = sqlStringComma(&s);
 ret->allele2CountCEU = sqlUnsignedComma(&s);
 ret->allele2CountCHB = sqlUnsignedComma(&s);
 ret->allele2CountJPT = sqlUnsignedComma(&s);
 ret->allele2CountYRI = sqlUnsignedComma(&s);
 ret->heteroCountCEU = sqlUnsignedComma(&s);
 ret->heteroCountCHB = sqlUnsignedComma(&s);
 ret->heteroCountJPT = sqlUnsignedComma(&s);
 ret->heteroCountYRI = sqlUnsignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void hapmapAllelesCombinedFree(struct hapmapAllelesCombined **pEl)
 /* Free a single dynamically allocated hapmapAllelesCombined such as created
  * with hapmapAllelesCombinedLoad(). */
 {
 struct hapmapAllelesCombined *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->observed);
 freeMem(el->allele2);
 freez(pEl);
 }
 
 void hapmapAllelesCombinedFreeList(struct hapmapAllelesCombined **pList)
 /* Free a list of dynamically allocated hapmapAllelesCombined's */
 {
 struct hapmapAllelesCombined *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     hapmapAllelesCombinedFree(&el);
     }
 *pList = NULL;
 }
 
 void hapmapAllelesCombinedOutput(struct hapmapAllelesCombined *el, FILE *f, char sep, char lastSep) 
 /* Print out hapmapAllelesCombined.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->observed);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->allele1);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->allele1CountCEU);
 fputc(sep,f);
 fprintf(f, "%u", el->allele1CountCHB);
 fputc(sep,f);
 fprintf(f, "%u", el->allele1CountJPT);
 fputc(sep,f);
 fprintf(f, "%u", el->allele1CountYRI);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->allele2);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->allele2CountCEU);
 fputc(sep,f);
 fprintf(f, "%u", el->allele2CountCHB);
 fputc(sep,f);
 fprintf(f, "%u", el->allele2CountJPT);
 fputc(sep,f);
 fprintf(f, "%u", el->allele2CountYRI);
 fputc(sep,f);
 fprintf(f, "%u", el->heteroCountCEU);
 fputc(sep,f);
 fprintf(f, "%u", el->heteroCountCHB);
 fputc(sep,f);
 fprintf(f, "%u", el->heteroCountJPT);
 fputc(sep,f);
 fprintf(f, "%u", el->heteroCountYRI);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */