e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/jaxOrtholog.c src/hg/lib/jaxOrtholog.c
index fc6743a..2c5dc89 100644
--- src/hg/lib/jaxOrtholog.c
+++ src/hg/lib/jaxOrtholog.c
@@ -1,168 +1,171 @@
 /* jaxOrtholog.c was originally generated by the autoSql program, which also 
  * generated jaxOrtholog.h and jaxOrtholog.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "jaxOrtholog.h"
 
 
 void jaxOrthologStaticLoad(char **row, struct jaxOrtholog *ret)
 /* Load a row from jaxOrtholog table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->humanSymbol = row[0];
 ret->humanBand = row[1];
 ret->mgiId = row[2];
 ret->mouseSymbol = row[3];
 ret->mouseChr = row[4];
 ret->mouseCm = row[5];
 ret->mouseBand = row[6];
 }
 
 struct jaxOrtholog *jaxOrthologLoad(char **row)
 /* Load a jaxOrtholog from row fetched with select * from jaxOrtholog
  * from database.  Dispose of this with jaxOrthologFree(). */
 {
 struct jaxOrtholog *ret;
 
 AllocVar(ret);
 ret->humanSymbol = cloneString(row[0]);
 ret->humanBand = cloneString(row[1]);
 ret->mgiId = cloneString(row[2]);
 ret->mouseSymbol = cloneString(row[3]);
 ret->mouseChr = cloneString(row[4]);
 ret->mouseCm = cloneString(row[5]);
 ret->mouseBand = cloneString(row[6]);
 return ret;
 }
 
 struct jaxOrtholog *jaxOrthologLoadAll(char *fileName) 
 /* Load all jaxOrtholog from a tab-separated file.
  * Dispose of this with jaxOrthologFreeList(). */
 {
 struct jaxOrtholog *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = jaxOrthologLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct jaxOrtholog *jaxOrthologLoadWhere(struct sqlConnection *conn, char *table, char *where)
 /* Load all jaxOrtholog from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with jaxOrthologFreeList(). */
 {
 struct jaxOrtholog *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 sqlDyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = jaxOrthologLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }
 
 struct jaxOrtholog *jaxOrthologCommaIn(char **pS, struct jaxOrtholog *ret)
 /* Create a jaxOrtholog out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new jaxOrtholog */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->humanSymbol = sqlStringComma(&s);
 ret->humanBand = sqlStringComma(&s);
 ret->mgiId = sqlStringComma(&s);
 ret->mouseSymbol = sqlStringComma(&s);
 ret->mouseChr = sqlStringComma(&s);
 ret->mouseCm = sqlStringComma(&s);
 ret->mouseBand = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void jaxOrthologFree(struct jaxOrtholog **pEl)
 /* Free a single dynamically allocated jaxOrtholog such as created
  * with jaxOrthologLoad(). */
 {
 struct jaxOrtholog *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->humanSymbol);
 freeMem(el->humanBand);
 freeMem(el->mgiId);
 freeMem(el->mouseSymbol);
 freeMem(el->mouseChr);
 freeMem(el->mouseCm);
 freeMem(el->mouseBand);
 freez(pEl);
 }
 
 void jaxOrthologFreeList(struct jaxOrtholog **pList)
 /* Free a list of dynamically allocated jaxOrtholog's */
 {
 struct jaxOrtholog *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     jaxOrthologFree(&el);
     }
 *pList = NULL;
 }
 
 void jaxOrthologOutput(struct jaxOrtholog *el, FILE *f, char sep, char lastSep) 
 /* Print out jaxOrtholog.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->humanSymbol);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->humanBand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mgiId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mouseSymbol);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mouseChr);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mouseCm);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mouseBand);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }