e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/jaxQTL3.c src/hg/lib/jaxQTL3.c
index 8d87ec0..d481227 100644
--- src/hg/lib/jaxQTL3.c
+++ src/hg/lib/jaxQTL3.c
@@ -1,200 +1,203 @@
 /* jaxQTL3.c was originally generated by the autoSql program, which also 
  * generated jaxQTL3.h and jaxQTL3.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "jaxQTL3.h"
 
 
 void jaxQTL3StaticLoad(char **row, struct jaxQTL3 *ret)
 /* Load a row from jaxQTL3 table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 strcpy(ret->strand, row[5]);
 ret->thickStart = sqlUnsigned(row[6]);
 ret->thickEnd = sqlUnsigned(row[7]);
 ret->marker = row[8];
 ret->mgiID = row[9];
 ret->description = row[10];
 ret->cMscore = atof(row[11]);
 ret->flank1 = row[12];
 ret->flank2 = row[13];
 }
 
 struct jaxQTL3 *jaxQTL3Load(char **row)
 /* Load a jaxQTL3 from row fetched with select * from jaxQTL3
  * from database.  Dispose of this with jaxQTL3Free(). */
 {
 struct jaxQTL3 *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 strcpy(ret->strand, row[5]);
 ret->thickStart = sqlUnsigned(row[6]);
 ret->thickEnd = sqlUnsigned(row[7]);
 ret->marker = cloneString(row[8]);
 ret->mgiID = cloneString(row[9]);
 ret->description = cloneString(row[10]);
 ret->cMscore = atof(row[11]);
 ret->flank1 = cloneString(row[12]);
 ret->flank2 = cloneString(row[13]);
 return ret;
 }
 
 struct jaxQTL3 *jaxQTL3LoadAll(char *fileName) 
 /* Load all jaxQTL3 from a whitespace-separated file.
  * Dispose of this with jaxQTL3FreeList(). */
 {
 struct jaxQTL3 *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileRow(lf, row))
     {
     el = jaxQTL3Load(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct jaxQTL3 *jaxQTL3LoadAllByChar(char *fileName, char chopper) 
 /* Load all jaxQTL3 from a chopper separated file.
  * Dispose of this with jaxQTL3FreeList(). */
 {
 struct jaxQTL3 *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = jaxQTL3Load(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct jaxQTL3 *jaxQTL3CommaIn(char **pS, struct jaxQTL3 *ret)
 /* Create a jaxQTL3 out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new jaxQTL3 */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->thickStart = sqlUnsignedComma(&s);
 ret->thickEnd = sqlUnsignedComma(&s);
 ret->marker = sqlStringComma(&s);
 ret->mgiID = sqlStringComma(&s);
 ret->description = sqlStringComma(&s);
 ret->cMscore = sqlFloatComma(&s);
 ret->flank1 = sqlStringComma(&s);
 ret->flank2 = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void jaxQTL3Free(struct jaxQTL3 **pEl)
 /* Free a single dynamically allocated jaxQTL3 such as created
  * with jaxQTL3Load(). */
 {
 struct jaxQTL3 *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->marker);
 freeMem(el->mgiID);
 freeMem(el->description);
 freeMem(el->flank1);
 freeMem(el->flank2);
 freez(pEl);
 }
 
 void jaxQTL3FreeList(struct jaxQTL3 **pList)
 /* Free a list of dynamically allocated jaxQTL3's */
 {
 struct jaxQTL3 *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     jaxQTL3Free(&el);
     }
 *pList = NULL;
 }
 
 void jaxQTL3Output(struct jaxQTL3 *el, FILE *f, char sep, char lastSep) 
 /* Print out jaxQTL3.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->thickStart);
 fputc(sep,f);
 fprintf(f, "%u", el->thickEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->marker);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mgiID);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->description);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->cMscore);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->flank1);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->flank2);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */