e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/knownCanonical.c src/hg/lib/knownCanonical.c
index cae77a0..e93d67e 100644
--- src/hg/lib/knownCanonical.c
+++ src/hg/lib/knownCanonical.c
@@ -1,146 +1,149 @@
 /* knownCanonical.c was originally generated by the autoSql program, which also 
  * generated knownCanonical.h and knownCanonical.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "knownCanonical.h"
 
 
 void knownCanonicalStaticLoad(char **row, struct knownCanonical *ret)
 /* Load a row from knownCanonical table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlSigned(row[2]);
 ret->clusterId = sqlSigned(row[3]);
 ret->transcript = row[4];
 ret->protein = row[5];
 }
 
 struct knownCanonical *knownCanonicalLoad(char **row)
 /* Load a knownCanonical from row fetched with select * from knownCanonical
  * from database.  Dispose of this with knownCanonicalFree(). */
 {
 struct knownCanonical *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlSigned(row[2]);
 ret->clusterId = sqlSigned(row[3]);
 ret->transcript = cloneString(row[4]);
 ret->protein = cloneString(row[5]);
 return ret;
 }
 
 struct knownCanonical *knownCanonicalLoadAll(char *fileName) 
 /* Load all knownCanonical from a whitespace-separated file.
  * Dispose of this with knownCanonicalFreeList(). */
 {
 struct knownCanonical *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = knownCanonicalLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct knownCanonical *knownCanonicalLoadAllByChar(char *fileName, char chopper) 
 /* Load all knownCanonical from a chopper separated file.
  * Dispose of this with knownCanonicalFreeList(). */
 {
 struct knownCanonical *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = knownCanonicalLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct knownCanonical *knownCanonicalCommaIn(char **pS, struct knownCanonical *ret)
 /* Create a knownCanonical out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new knownCanonical */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlSignedComma(&s);
 ret->chromEnd = sqlSignedComma(&s);
 ret->clusterId = sqlSignedComma(&s);
 ret->transcript = sqlStringComma(&s);
 ret->protein = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void knownCanonicalFree(struct knownCanonical **pEl)
 /* Free a single dynamically allocated knownCanonical such as created
  * with knownCanonicalLoad(). */
 {
 struct knownCanonical *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->transcript);
 freeMem(el->protein);
 freez(pEl);
 }
 
 void knownCanonicalFreeList(struct knownCanonical **pList)
 /* Free a list of dynamically allocated knownCanonical's */
 {
 struct knownCanonical *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     knownCanonicalFree(&el);
     }
 *pList = NULL;
 }
 
 void knownCanonicalOutput(struct knownCanonical *el, FILE *f, char sep, char lastSep) 
 /* Print out knownCanonical.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%d", el->chromEnd);
 fputc(sep,f);
 fprintf(f, "%d", el->clusterId);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->transcript);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->protein);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */