e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/ld2.c src/hg/lib/ld2.c
index afcede8..3834262 100644
--- src/hg/lib/ld2.c
+++ src/hg/lib/ld2.c
@@ -1,190 +1,193 @@
 /* ld2.c was originally generated by the autoSql program, which also 
  * generated ld2.h and ld2.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "ld2.h"
 
 
 void ld2StaticLoad(char **row, struct ld2 *ret)
 /* Load a row from ld2 table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->ldCount = sqlUnsigned(row[4]);
 ret->dprime = row[5];
 ret->rsquared = row[6];
 ret->lod = row[7];
 ret->avgDprime = row[8][0];
 ret->avgRsquared = row[9][0];
 ret->avgLod = row[10][0];
 ret->tInt = row[11][0];
 }
 
 struct ld2 *ld2Load(char **row)
 /* Load a ld2 from row fetched with select * from ld2
  * from database.  Dispose of this with ld2Free(). */
 {
 struct ld2 *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->ldCount = sqlUnsigned(row[4]);
 ret->dprime = cloneString(row[5]);
 ret->rsquared = cloneString(row[6]);
 ret->lod = cloneString(row[7]);
 ret->avgDprime = row[8][0];
 ret->avgRsquared = row[9][0];
 ret->avgLod = row[10][0];
 ret->tInt = row[11][0];
 return ret;
 }
 
 struct ld2 *ld2LoadAll(char *fileName) 
 /* Load all ld2 from a whitespace-separated file.
  * Dispose of this with ld2FreeList(). */
 {
 struct ld2 *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileRow(lf, row))
     {
     el = ld2Load(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ld2 *ld2LoadAllByChar(char *fileName, char chopper) 
 /* Load all ld2 from a chopper separated file.
  * Dispose of this with ld2FreeList(). */
 {
 struct ld2 *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[12];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = ld2Load(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ld2 *ld2CommaIn(char **pS, struct ld2 *ret)
 /* Create a ld2 out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ld2 */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->ldCount = sqlUnsignedComma(&s);
 ret->dprime = sqlStringComma(&s);
 ret->rsquared = sqlStringComma(&s);
 ret->lod = sqlStringComma(&s);
 sqlFixedStringComma(&s, &(ret->avgDprime), sizeof(ret->avgDprime));
 sqlFixedStringComma(&s, &(ret->avgRsquared), sizeof(ret->avgRsquared));
 sqlFixedStringComma(&s, &(ret->avgLod), sizeof(ret->avgLod));
 sqlFixedStringComma(&s, &(ret->tInt), sizeof(ret->tInt));
 *pS = s;
 return ret;
 }
 
 void ld2Free(struct ld2 **pEl)
 /* Free a single dynamically allocated ld2 such as created
  * with ld2Load(). */
 {
 struct ld2 *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->dprime);
 freeMem(el->rsquared);
 freeMem(el->lod);
 freez(pEl);
 }
 
 void ld2FreeList(struct ld2 **pList)
 /* Free a list of dynamically allocated ld2's */
 {
 struct ld2 *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     ld2Free(&el);
     }
 *pList = NULL;
 }
 
 void ld2Output(struct ld2 *el, FILE *f, char sep, char lastSep) 
 /* Print out ld2.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->ldCount);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dprime);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rsquared);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->lod);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->avgDprime);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->avgRsquared);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->avgLod);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->tInt);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */