e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/recombRate.c src/hg/lib/recombRate.c
index 6011640..1ee1237 100644
--- src/hg/lib/recombRate.c
+++ src/hg/lib/recombRate.c
@@ -1,183 +1,186 @@
 /* recombRate.c was originally generated by the autoSql program, which also 
  * generated recombRate.h and recombRate.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "recombRate.h"
 
 
 void recombRateStaticLoad(char **row, struct recombRate *ret)
 /* Load a row from recombRate table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->decodeAvg = atof(row[4]);
 ret->decodeFemale = atof(row[5]);
 ret->decodeMale = atof(row[6]);
 ret->marshfieldAvg = atof(row[7]);
 ret->marshfieldFemale = atof(row[8]);
 ret->marshfieldMale = atof(row[9]);
 ret->genethonAvg = atof(row[10]);
 ret->genethonFemale = atof(row[11]);
 ret->genethonMale = atof(row[12]);
 }
 
 struct recombRate *recombRateLoad(char **row)
 /* Load a recombRate from row fetched with select * from recombRate
  * from database.  Dispose of this with recombRateFree(). */
 {
 struct recombRate *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->decodeAvg = atof(row[4]);
 ret->decodeFemale = atof(row[5]);
 ret->decodeMale = atof(row[6]);
 ret->marshfieldAvg = atof(row[7]);
 ret->marshfieldFemale = atof(row[8]);
 ret->marshfieldMale = atof(row[9]);
 ret->genethonAvg = atof(row[10]);
 ret->genethonFemale = atof(row[11]);
 ret->genethonMale = atof(row[12]);
 return ret;
 }
 
 struct recombRate *recombRateLoadAll(char *fileName) 
 /* Load all recombRate from a tab-separated file.
  * Dispose of this with recombRateFreeList(). */
 {
 struct recombRate *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[13];
 
 while (lineFileRow(lf, row))
     {
     el = recombRateLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct recombRate *recombRateLoadWhere(struct sqlConnection *conn, char *table, char *where)
 /* Load all recombRate from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with recombRateFreeList(). */
 {
 struct recombRate *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 sqlDyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = recombRateLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }
 
 struct recombRate *recombRateCommaIn(char **pS, struct recombRate *ret)
 /* Create a recombRate out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new recombRate */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->decodeAvg = sqlFloatComma(&s);
 ret->decodeFemale = sqlFloatComma(&s);
 ret->decodeMale = sqlFloatComma(&s);
 ret->marshfieldAvg = sqlFloatComma(&s);
 ret->marshfieldFemale = sqlFloatComma(&s);
 ret->marshfieldMale = sqlFloatComma(&s);
 ret->genethonAvg = sqlFloatComma(&s);
 ret->genethonFemale = sqlFloatComma(&s);
 ret->genethonMale = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void recombRateFree(struct recombRate **pEl)
 /* Free a single dynamically allocated recombRate such as created
  * with recombRateLoad(). */
 {
 struct recombRate *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freez(pEl);
 }
 
 void recombRateFreeList(struct recombRate **pList)
 /* Free a list of dynamically allocated recombRate's */
 {
 struct recombRate *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     recombRateFree(&el);
     }
 *pList = NULL;
 }
 
 void recombRateOutput(struct recombRate *el, FILE *f, char sep, char lastSep) 
 /* Print out recombRate.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->decodeAvg);
 fputc(sep,f);
 fprintf(f, "%f", el->decodeFemale);
 fputc(sep,f);
 fprintf(f, "%f", el->decodeMale);
 fputc(sep,f);
 fprintf(f, "%f", el->marshfieldAvg);
 fputc(sep,f);
 fprintf(f, "%f", el->marshfieldFemale);
 fputc(sep,f);
 fprintf(f, "%f", el->marshfieldMale);
 fputc(sep,f);
 fprintf(f, "%f", el->genethonAvg);
 fputc(sep,f);
 fprintf(f, "%f", el->genethonFemale);
 fputc(sep,f);
 fprintf(f, "%f", el->genethonMale);
 fputc(lastSep,f);
 }