e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/refLink.c src/hg/lib/refLink.c
index 2b1307b..b4d61d7 100644
--- src/hg/lib/refLink.c
+++ src/hg/lib/refLink.c
@@ -1,138 +1,141 @@
 /* refLink.c was originally generated by the autoSql program, which also 
  * generated refLink.h and refLink.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "refLink.h"
 
 
 void refLinkStaticLoad(char **row, struct refLink *ret)
 /* Load a row from refLink table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->product = row[1];
 ret->mrnaAcc = row[2];
 ret->protAcc = row[3];
 ret->geneId = sqlUnsigned(row[4]);
 ret->prodId = sqlUnsigned(row[5]);
 ret->locusLinkId = sqlUnsigned(row[6]);
 ret->omimId = sqlUnsigned(row[7]);
 }
 
 struct refLink *refLinkLoad(char **row)
 /* Load a refLink from row fetched with select * from refLink
  * from database.  Dispose of this with refLinkFree(). */
 {
 struct refLink *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->product = cloneString(row[1]);
 ret->mrnaAcc = cloneString(row[2]);
 ret->protAcc = cloneString(row[3]);
 ret->geneId = sqlUnsigned(row[4]);
 ret->prodId = sqlUnsigned(row[5]);
 ret->locusLinkId = sqlUnsigned(row[6]);
 ret->omimId = sqlUnsigned(row[7]);
 return ret;
 }
 
 struct refLink *refLinkLoadAll(char *fileName) 
 /* Load all refLink from a tab-separated file.
  * Dispose of this with refLinkFreeList(). */
 {
 struct refLink *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = refLinkLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct refLink *refLinkCommaIn(char **pS, struct refLink *ret)
 /* Create a refLink out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new refLink */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->product = sqlStringComma(&s);
 ret->mrnaAcc = sqlStringComma(&s);
 ret->protAcc = sqlStringComma(&s);
 ret->geneId = sqlUnsignedComma(&s);
 ret->prodId = sqlUnsignedComma(&s);
 ret->locusLinkId = sqlUnsignedComma(&s);
 ret->omimId = sqlUnsignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void refLinkFree(struct refLink **pEl)
 /* Free a single dynamically allocated refLink such as created
  * with refLinkLoad(). */
 {
 struct refLink *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->product);
 freeMem(el->mrnaAcc);
 freeMem(el->protAcc);
 freez(pEl);
 }
 
 void refLinkFreeList(struct refLink **pList)
 /* Free a list of dynamically allocated refLink's */
 {
 struct refLink *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     refLinkFree(&el);
     }
 *pList = NULL;
 }
 
 void refLinkOutput(struct refLink *el, FILE *f, char sep, char lastSep) 
 /* Print out refLink.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->product);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mrnaAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->protAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->geneId);
 fputc(sep,f);
 fprintf(f, "%u", el->prodId);
 fputc(sep,f);
 fprintf(f, "%u", el->locusLinkId);
 fputc(sep,f);
 fprintf(f, "%u", el->omimId);
 fputc(lastSep,f);
 }