e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/sanger22extra.c src/hg/lib/sanger22extra.c
index 9958041..dde8cef 100644
--- src/hg/lib/sanger22extra.c
+++ src/hg/lib/sanger22extra.c
@@ -1,139 +1,142 @@
 /* sanger22extra.c was originally generated by the autoSql program, which also 
  * generated sanger22extra.h and sanger22extra.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "sanger22extra.h"
 
 
 void sanger22extraStaticLoad(char **row, struct sanger22extra *ret)
 /* Load a row from sanger22extra table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->locus = row[1];
 ret->description = row[2];
 ret->geneType = row[3];
 ret->cdsType = row[4];
 }
 
 struct sanger22extra *sanger22extraLoad(char **row)
 /* Load a sanger22extra from row fetched with select * from sanger22extra
  * from database.  Dispose of this with sanger22extraFree(). */
 {
 struct sanger22extra *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->locus = cloneString(row[1]);
 ret->description = cloneString(row[2]);
 ret->geneType = cloneString(row[3]);
 ret->cdsType = cloneString(row[4]);
 return ret;
 }
 
 struct sanger22extra *sanger22extraLoadAll(char *fileName) 
 /* Load all sanger22extra from a tab-separated file.
  * Dispose of this with sanger22extraFreeList(). */
 {
 struct sanger22extra *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = sanger22extraLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct sanger22extra *sanger22extraCommaIn(char **pS, struct sanger22extra *ret)
 /* Create a sanger22extra out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new sanger22extra */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->locus = sqlStringComma(&s);
 ret->description = sqlStringComma(&s);
 ret->geneType = sqlStringComma(&s);
 ret->cdsType = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void sanger22extraFree(struct sanger22extra **pEl)
 /* Free a single dynamically allocated sanger22extra such as created
  * with sanger22extraLoad(). */
 {
 struct sanger22extra *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->locus);
 freeMem(el->description);
 freeMem(el->geneType);
 freeMem(el->cdsType);
 freez(pEl);
 }
 
 void sanger22extraFreeList(struct sanger22extra **pList)
 /* Free a list of dynamically allocated sanger22extra's */
 {
 struct sanger22extra *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     sanger22extraFree(&el);
     }
 *pList = NULL;
 }
 
 void sanger22extraOutput(struct sanger22extra *el, FILE *f, char sep, char lastSep) 
 /* Print out sanger22extra.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->locus);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->description);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->cdsType);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* ---------------- End of AutoSQL generated code. ----------------------- */
 
 char *sanger22extraCreate = 
 "CREATE TABLE %s (\n"
 "    name varchar(255) not null,	# Transcript name\n"
 "    locus varchar(255) not null,	# Possibly biological short name\n"
 "    description longblob not null,	# Description from Sanger gene GFFs\n"
 "    geneType varchar(255) not null,	# Type field from Sanger gene GFFs\n"
 "    cdsType varchar(255) not null,	# Type field from Sanger CDS GFFs\n"
 "              #Indices\n"
 "    PRIMARY KEY(name)\n"
 ")\n";