e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/snpExceptions.c src/hg/lib/snpExceptions.c
index b00b4a6..03de13f 100644
--- src/hg/lib/snpExceptions.c
+++ src/hg/lib/snpExceptions.c
@@ -1,178 +1,181 @@
 /* snpExceptions.c was originally generated by the autoSql program, which also 
  * generated snpExceptions.h and snpExceptions.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "snpExceptions.h"
 
 
 void snpExceptionsStaticLoad(char **row, struct snpExceptions *ret)
 /* Load a row from snpExceptions table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->exceptionId = sqlUnsigned(row[0]);
 ret->query = row[1];
 ret->num = sqlUnsigned(row[2]);
 ret->description = row[3];
 ret->resultPath = row[4];
 }
 
 struct snpExceptions *snpExceptionsLoad(char **row)
 /* Load a snpExceptions from row fetched with select * from snpExceptions
  * from database.  Dispose of this with snpExceptionsFree(). */
 {
 struct snpExceptions *ret;
 
 AllocVar(ret);
 ret->exceptionId = sqlUnsigned(row[0]);
 ret->query = cloneString(row[1]);
 ret->num = sqlUnsigned(row[2]);
 ret->description = cloneString(row[3]);
 ret->resultPath = cloneString(row[4]);
 return ret;
 }
 
 struct snpExceptions *snpExceptionsLoadAll(char *fileName) 
 /* Load all snpExceptions from a whitespace-separated file.
  * Dispose of this with snpExceptionsFreeList(). */
 {
 struct snpExceptions *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = snpExceptionsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct snpExceptions *snpExceptionsLoadAllByChar(char *fileName, char chopper) 
 /* Load all snpExceptions from a chopper separated file.
  * Dispose of this with snpExceptionsFreeList(). */
 {
 struct snpExceptions *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = snpExceptionsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct snpExceptions *snpExceptionsLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all snpExceptions from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with snpExceptionsFreeList(). */
 {
 struct snpExceptions *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = snpExceptionsLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void snpExceptionsSaveToDb(struct sqlConnection *conn, struct snpExceptions *el, char *tableName, int updateSize)
 /* Save snpExceptions as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( %u,'%s',%u,'%s','%s')", 
 	tableName,  el->exceptionId,  el->query,  el->num,  el->description,  el->resultPath);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct snpExceptions *snpExceptionsCommaIn(char **pS, struct snpExceptions *ret)
 /* Create a snpExceptions out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new snpExceptions */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->exceptionId = sqlUnsignedComma(&s);
 ret->query = sqlStringComma(&s);
 ret->num = sqlUnsignedComma(&s);
 ret->description = sqlStringComma(&s);
 ret->resultPath = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void snpExceptionsFree(struct snpExceptions **pEl)
 /* Free a single dynamically allocated snpExceptions such as created
  * with snpExceptionsLoad(). */
 {
 struct snpExceptions *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->query);
 freeMem(el->description);
 freeMem(el->resultPath);
 freez(pEl);
 }
 
 void snpExceptionsFreeList(struct snpExceptions **pList)
 /* Free a list of dynamically allocated snpExceptions's */
 {
 struct snpExceptions *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     snpExceptionsFree(&el);
     }
 *pList = NULL;
 }
 
 void snpExceptionsOutput(struct snpExceptions *el, FILE *f, char sep, char lastSep) 
 /* Print out snpExceptions.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%u", el->exceptionId);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->query);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->num);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->description);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->resultPath);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */