e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/stanMad.c src/hg/lib/stanMad.c
index e3287e6..3638106 100644
--- src/hg/lib/stanMad.c
+++ src/hg/lib/stanMad.c
@@ -1,309 +1,312 @@
 /* stanMad.c was originally generated by the autoSql program, which also 
  * generated stanMad.h and stanMad.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "stanMad.h"
 
 
 void stanMadStaticLoad(char **row, struct stanMad *ret)
 /* Load a row from stanMad table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->exp = row[0];
 ret->name = row[1];
 ret->type = row[2];
 ret->ch1i = sqlSigned(row[3]);
 ret->ch1b = sqlSigned(row[4]);
 ret->ch1d = sqlSigned(row[5]);
 ret->ch2i = sqlSigned(row[6]);
 ret->ch2b = sqlSigned(row[7]);
 ret->ch2d = sqlSigned(row[8]);
 ret->ch2in = sqlSigned(row[9]);
 ret->ch2bn = sqlSigned(row[10]);
 ret->ch2dn = sqlSigned(row[11]);
 ret->rat1 = atof(row[12]);
 ret->rat2 = atof(row[13]);
 ret->rat1n = atof(row[14]);
 ret->rat2n = atof(row[15]);
 ret->mrat = atof(row[16]);
 ret->crt1 = atof(row[17]);
 ret->crt2 = atof(row[18]);
 ret->regr = atof(row[19]);
 ret->corr = atof(row[20]);
 ret->edge = atof(row[21]);
 ret->fing = sqlSigned(row[22]);
 ret->grid = sqlSigned(row[23]);
 ret->arow = sqlSigned(row[24]);
 ret->row = sqlSigned(row[25]);
 ret->acol = sqlSigned(row[26]);
 ret->col = sqlSigned(row[27]);
 ret->plat = sqlSigned(row[28]);
 ret->prow = row[29];
 ret->pcol = sqlSigned(row[30]);
 ret->flag = sqlSigned(row[31]);
 ret->clid = sqlSigned(row[32]);
 ret->spot = sqlSigned(row[33]);
 ret->left = sqlSigned(row[34]);
 ret->top = sqlSigned(row[35]);
 ret->right = sqlSigned(row[36]);
 ret->bot = sqlSigned(row[37]);
 ret->acc5 = row[38];
 ret->acc3 = row[39];
 }
 
 struct stanMad *stanMadLoad(char **row)
 /* Load a stanMad from row fetched with select * from stanMad
  * from database.  Dispose of this with stanMadFree(). */
 {
 struct stanMad *ret;
 
 AllocVar(ret);
 ret->exp = cloneString(row[0]);
 ret->name = cloneString(row[1]);
 ret->type = cloneString(row[2]);
 ret->ch1i = sqlSigned(row[3]);
 ret->ch1b = sqlSigned(row[4]);
 ret->ch1d = sqlSigned(row[5]);
 ret->ch2i = sqlSigned(row[6]);
 ret->ch2b = sqlSigned(row[7]);
 ret->ch2d = sqlSigned(row[8]);
 ret->ch2in = sqlSigned(row[9]);
 ret->ch2bn = sqlSigned(row[10]);
 ret->ch2dn = sqlSigned(row[11]);
 ret->rat1 = atof(row[12]);
 ret->rat2 = atof(row[13]);
 ret->rat1n = atof(row[14]);
 ret->rat2n = atof(row[15]);
 ret->mrat = atof(row[16]);
 ret->crt1 = atof(row[17]);
 ret->crt2 = atof(row[18]);
 ret->regr = atof(row[19]);
 ret->corr = atof(row[20]);
 ret->edge = atof(row[21]);
 ret->fing = sqlSigned(row[22]);
 ret->grid = sqlSigned(row[23]);
 ret->arow = sqlSigned(row[24]);
 ret->row = sqlSigned(row[25]);
 ret->acol = sqlSigned(row[26]);
 ret->col = sqlSigned(row[27]);
 ret->plat = sqlSigned(row[28]);
 ret->prow = cloneString(row[29]);
 ret->pcol = sqlSigned(row[30]);
 ret->flag = sqlSigned(row[31]);
 ret->clid = sqlSigned(row[32]);
 ret->spot = sqlSigned(row[33]);
 ret->left = sqlSigned(row[34]);
 ret->top = sqlSigned(row[35]);
 ret->right = sqlSigned(row[36]);
 ret->bot = sqlSigned(row[37]);
 ret->acc5 = cloneString(row[38]);
 ret->acc3 = cloneString(row[39]);
 return ret;
 }
 
 struct stanMad *stanMadLoadAll(char *fileName) 
 /* Load all stanMad from a tab-separated file.
  * Dispose of this with stanMadFreeList(). */
 {
 struct stanMad *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[40];
 
 while (lineFileNextRowTab(lf, row, ArraySize(row)))
     {
     if(strstr(row[0], "EXP"))
 	continue;
     el = stanMadLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct stanMad *stanMadCommaIn(char **pS, struct stanMad *ret)
 /* Create a stanMad out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new stanMad */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->exp = sqlStringComma(&s);
 ret->name = sqlStringComma(&s);
 ret->type = sqlStringComma(&s);
 ret->ch1i = sqlSignedComma(&s);
 ret->ch1b = sqlSignedComma(&s);
 ret->ch1d = sqlSignedComma(&s);
 ret->ch2i = sqlSignedComma(&s);
 ret->ch2b = sqlSignedComma(&s);
 ret->ch2d = sqlSignedComma(&s);
 ret->ch2in = sqlSignedComma(&s);
 ret->ch2bn = sqlSignedComma(&s);
 ret->ch2dn = sqlSignedComma(&s);
 ret->rat1 = sqlFloatComma(&s);
 ret->rat2 = sqlFloatComma(&s);
 ret->rat1n = sqlFloatComma(&s);
 ret->rat2n = sqlFloatComma(&s);
 ret->mrat = sqlFloatComma(&s);
 ret->crt1 = sqlFloatComma(&s);
 ret->crt2 = sqlFloatComma(&s);
 ret->regr = sqlFloatComma(&s);
 ret->corr = sqlFloatComma(&s);
 ret->edge = sqlFloatComma(&s);
 ret->fing = sqlSignedComma(&s);
 ret->grid = sqlSignedComma(&s);
 ret->arow = sqlSignedComma(&s);
 ret->row = sqlSignedComma(&s);
 ret->acol = sqlSignedComma(&s);
 ret->col = sqlSignedComma(&s);
 ret->plat = sqlSignedComma(&s);
 ret->prow = sqlStringComma(&s);
 ret->pcol = sqlSignedComma(&s);
 ret->flag = sqlSignedComma(&s);
 ret->clid = sqlSignedComma(&s);
 ret->spot = sqlSignedComma(&s);
 ret->left = sqlSignedComma(&s);
 ret->top = sqlSignedComma(&s);
 ret->right = sqlSignedComma(&s);
 ret->bot = sqlSignedComma(&s);
 ret->acc5 = sqlStringComma(&s);
 ret->acc3 = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void stanMadFree(struct stanMad **pEl)
 /* Free a single dynamically allocated stanMad such as created
  * with stanMadLoad(). */
 {
 struct stanMad *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->exp);
 freeMem(el->name);
 freeMem(el->type);
 freeMem(el->prow);
 freeMem(el->acc5);
 freeMem(el->acc3);
 freez(pEl);
 }
 
 void stanMadFreeList(struct stanMad **pList)
 /* Free a list of dynamically allocated stanMad's */
 {
 struct stanMad *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     stanMadFree(&el);
     }
 *pList = NULL;
 }
 
 void stanMadOutput(struct stanMad *el, FILE *f, char sep, char lastSep) 
 /* Print out stanMad.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->exp);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->ch1i);
 fputc(sep,f);
 fprintf(f, "%d", el->ch1b);
 fputc(sep,f);
 fprintf(f, "%d", el->ch1d);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2i);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2b);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2d);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2in);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2bn);
 fputc(sep,f);
 fprintf(f, "%d", el->ch2dn);
 fputc(sep,f);
 fprintf(f, "%f", el->rat1);
 fputc(sep,f);
 fprintf(f, "%f", el->rat2);
 fputc(sep,f);
 fprintf(f, "%f", el->rat1n);
 fputc(sep,f);
 fprintf(f, "%f", el->rat2n);
 fputc(sep,f);
 fprintf(f, "%f", el->mrat);
 fputc(sep,f);
 fprintf(f, "%f", el->crt1);
 fputc(sep,f);
 fprintf(f, "%f", el->crt2);
 fputc(sep,f);
 fprintf(f, "%f", el->regr);
 fputc(sep,f);
 fprintf(f, "%f", el->corr);
 fputc(sep,f);
 fprintf(f, "%f", el->edge);
 fputc(sep,f);
 fprintf(f, "%d", el->fing);
 fputc(sep,f);
 fprintf(f, "%d", el->grid);
 fputc(sep,f);
 fprintf(f, "%d", el->arow);
 fputc(sep,f);
 fprintf(f, "%d", el->row);
 fputc(sep,f);
 fprintf(f, "%d", el->acol);
 fputc(sep,f);
 fprintf(f, "%d", el->col);
 fputc(sep,f);
 fprintf(f, "%d", el->plat);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->prow);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->pcol);
 fputc(sep,f);
 fprintf(f, "%d", el->flag);
 fputc(sep,f);
 fprintf(f, "%d", el->clid);
 fputc(sep,f);
 fprintf(f, "%d", el->spot);
 fputc(sep,f);
 fprintf(f, "%d", el->left);
 fputc(sep,f);
 fprintf(f, "%d", el->top);
 fputc(sep,f);
 fprintf(f, "%d", el->right);
 fputc(sep,f);
 fprintf(f, "%d", el->bot);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->acc5);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->acc3);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */