e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/stsInfoRat.c src/hg/lib/stsInfoRat.c
index 13e2ac5..0c3292a 100644
--- src/hg/lib/stsInfoRat.c
+++ src/hg/lib/stsInfoRat.c
@@ -1,262 +1,265 @@
 /* stsInfoRat.c was originally generated by the autoSql program, which also 
  * generated stsInfoRat.h and stsInfoRat.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "stsInfoRat.h"
 
 
 void stsInfoRatStaticLoad(char **row, struct stsInfoRat *ret)
 /* Load a row from stsInfoRat table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->identNo = sqlUnsigned(row[0]);
 ret->name = row[1];
 ret->RGDId = sqlUnsigned(row[2]);
 ret->RGDName = row[3];
 ret->UiStsId = sqlUnsigned(row[4]);
 ret->nameCount = sqlUnsigned(row[5]);
 ret->alias = row[6];
 ret->primer1 = row[7];
 ret->primer2 = row[8];
 ret->distance = row[9];
 ret->sequence = sqlUnsigned(row[10]);
 ret->organis = row[11];
 ret->fhhName = row[12];
 ret->fhhChr = row[13];
 ret->fhhGeneticPos = atof(row[14]);
 ret->shrspName = row[15];
 ret->shrspChr = row[16];
 ret->shrspGeneticPos = atof(row[17]);
 ret->rhName = row[18];
 ret->rhChr = row[19];
 ret->rhGeneticPos = atof(row[20]);
 ret->RHLOD = atof(row[21]);
 ret->GeneName = row[22];
 ret->GeneID = row[23];
 ret->clone = row[24];
 }
 
 struct stsInfoRat *stsInfoRatLoad(char **row)
 /* Load a stsInfoRat from row fetched with select * from stsInfoRat
  * from database.  Dispose of this with stsInfoRatFree(). */
 {
 struct stsInfoRat *ret;
 
 AllocVar(ret);
 ret->identNo = sqlUnsigned(row[0]);
 ret->name = cloneString(row[1]);
 ret->RGDId = sqlUnsigned(row[2]);
 ret->RGDName = cloneString(row[3]);
 ret->UiStsId = sqlUnsigned(row[4]);
 ret->nameCount = sqlUnsigned(row[5]);
 ret->alias = cloneString(row[6]);
 ret->primer1 = cloneString(row[7]);
 ret->primer2 = cloneString(row[8]);
 ret->distance = cloneString(row[9]);
 ret->sequence = sqlUnsigned(row[10]);
 ret->organis = cloneString(row[11]);
 ret->fhhName = cloneString(row[12]);
 ret->fhhChr = cloneString(row[13]);
 ret->fhhGeneticPos = atof(row[14]);
 ret->shrspName = cloneString(row[15]);
 ret->shrspChr = cloneString(row[16]);
 ret->shrspGeneticPos = atof(row[17]);
 ret->rhName = cloneString(row[18]);
 ret->rhChr = cloneString(row[19]);
 ret->rhGeneticPos = atof(row[20]);
 ret->RHLOD = atof(row[21]);
 ret->GeneName = cloneString(row[22]);
 ret->GeneID = cloneString(row[23]);
 ret->clone = cloneString(row[24]);
 return ret;
 }
 
 struct stsInfoRat *stsInfoRatLoadAll(char *fileName) 
 /* Load all stsInfoRat from a tab-separated file.
  * Dispose of this with stsInfoRatFreeList(). */
 {
 struct stsInfoRat *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[25];
 
 while (lineFileRow(lf, row))
     {
     el = stsInfoRatLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct stsInfoRat *stsInfoRatCommaIn(char **pS, struct stsInfoRat *ret)
 /* Create a stsInfoRat out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new stsInfoRat */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->identNo = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->RGDId = sqlUnsignedComma(&s);
 ret->RGDName = sqlStringComma(&s);
 ret->UiStsId = sqlUnsignedComma(&s);
 ret->nameCount = sqlUnsignedComma(&s);
 ret->alias = sqlStringComma(&s);
 ret->primer1 = sqlStringComma(&s);
 ret->primer2 = sqlStringComma(&s);
 ret->distance = sqlStringComma(&s);
 ret->sequence = sqlUnsignedComma(&s);
 ret->organis = sqlStringComma(&s);
 ret->fhhName = sqlStringComma(&s);
 ret->fhhChr = sqlStringComma(&s);
 ret->fhhGeneticPos = sqlFloatComma(&s);
 ret->shrspName = sqlStringComma(&s);
 ret->shrspChr = sqlStringComma(&s);
 ret->shrspGeneticPos = sqlFloatComma(&s);
 ret->rhName = sqlStringComma(&s);
 ret->rhChr = sqlStringComma(&s);
 ret->rhGeneticPos = sqlFloatComma(&s);
 ret->RHLOD = sqlFloatComma(&s);
 ret->GeneName = sqlStringComma(&s);
 ret->GeneID = sqlStringComma(&s);
 ret->clone = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void stsInfoRatFree(struct stsInfoRat **pEl)
 /* Free a single dynamically allocated stsInfoRat such as created
  * with stsInfoRatLoad(). */
 {
 struct stsInfoRat *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->RGDName);
 freeMem(el->alias);
 freeMem(el->primer1);
 freeMem(el->primer2);
 freeMem(el->distance);
 freeMem(el->organis);
 freeMem(el->fhhName);
 freeMem(el->fhhChr);
 freeMem(el->shrspName);
 freeMem(el->shrspChr);
 freeMem(el->rhName);
 freeMem(el->rhChr);
 freeMem(el->GeneName);
 freeMem(el->GeneID);
 freeMem(el->clone);
 freez(pEl);
 }
 
 void stsInfoRatFreeList(struct stsInfoRat **pList)
 /* Free a list of dynamically allocated stsInfoRat's */
 {
 struct stsInfoRat *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     stsInfoRatFree(&el);
     }
 *pList = NULL;
 }
 
 void stsInfoRatOutput(struct stsInfoRat *el, FILE *f, char sep, char lastSep) 
 /* Print out stsInfoRat.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%u", el->identNo);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->RGDId);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->RGDName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->UiStsId);
 fputc(sep,f);
 fprintf(f, "%u", el->nameCount);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->alias);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->primer1);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->primer2);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->distance);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->sequence);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->organis);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->fhhName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->fhhChr);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->fhhGeneticPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->shrspName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->shrspChr);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->shrspGeneticPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rhName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rhChr);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->rhGeneticPos);
 fputc(sep,f);
 fprintf(f, "%f", el->RHLOD);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->GeneName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->GeneID);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->clone);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */