e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/tilingPath.c src/hg/lib/tilingPath.c
index 6710e9b..bf5a67a 100644
--- src/hg/lib/tilingPath.c
+++ src/hg/lib/tilingPath.c
@@ -1,149 +1,152 @@
 /* tilingPath.c was originally generated by the autoSql program, which also 
  * generated tilingPath.h and tilingPath.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "tilingPath.h"
 
 
 void tilingPathStaticLoad(char **row, struct tilingPath *ret)
 /* Load a row from tilingPath table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->accession = row[1];
 ret->clone = row[2];
 ret->contig = row[3];
 ret->chromIx = sqlSigned(row[4]);
 }
 
 struct tilingPath *tilingPathLoad(char **row)
 /* Load a tilingPath from row fetched with select * from tilingPath
  * from database.  Dispose of this with tilingPathFree(). */
 {
 struct tilingPath *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->accession = cloneString(row[1]);
 ret->clone = cloneString(row[2]);
 ret->contig = cloneString(row[3]);
 ret->chromIx = sqlSigned(row[4]);
 return ret;
 }
 
 struct tilingPath *tilingPathLoadAll(char *fileName) 
 /* Load all tilingPath from a tab-separated file.
  * Dispose of this with tilingPathFreeList(). */
 {
 struct tilingPath *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = tilingPathLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct tilingPath *tilingPathLoadWhere(struct sqlConnection *conn, char *table, char *where)
 /* Load all tilingPath from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with tilingPathFreeList(). */
 {
 struct tilingPath *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 sqlDyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = tilingPathLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }
 
 struct tilingPath *tilingPathCommaIn(char **pS, struct tilingPath *ret)
 /* Create a tilingPath out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new tilingPath */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->accession = sqlStringComma(&s);
 ret->clone = sqlStringComma(&s);
 ret->contig = sqlStringComma(&s);
 ret->chromIx = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void tilingPathFree(struct tilingPath **pEl)
 /* Free a single dynamically allocated tilingPath such as created
  * with tilingPathLoad(). */
 {
 struct tilingPath *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->accession);
 freeMem(el->clone);
 freeMem(el->contig);
 freez(pEl);
 }
 
 void tilingPathFreeList(struct tilingPath **pList)
 /* Free a list of dynamically allocated tilingPath's */
 {
 struct tilingPath *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     tilingPathFree(&el);
     }
 *pList = NULL;
 }
 
 void tilingPathOutput(struct tilingPath *el, FILE *f, char sep, char lastSep) 
 /* Print out tilingPath.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->accession);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->clone);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->contig);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromIx);
 fputc(lastSep,f);
 }