e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/trackDb.c src/hg/lib/trackDb.c
index a94c532..d36603f 100644
--- src/hg/lib/trackDb.c
+++ src/hg/lib/trackDb.c
@@ -1,267 +1,270 @@
 /* trackDb.c was originally generated by the autoSql program, which also
  * generated trackDb.h and trackDb.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "trackDb.h"
 #include "hash.h"
 
 
 struct trackDb *trackDbLoad(char **row)
 /* Load a trackDb from row fetched with select * from trackDb
  * from database.  Dispose of this with trackDbFree(). */
 {
 struct trackDb *ret;
 int sizeOne;
 
 AllocVar(ret);
 ret->restrictCount = sqlSigned(row[14]);
 ret->track = cloneString(row[0]);
 ret->shortLabel = cloneString(row[1]);
 ret->type = cloneString(row[2]);
 ret->longLabel = cloneString(row[3]);
 ret->visibility = sqlUnsigned(row[4]);
 ret->priority = atof(row[5]);
 ret->colorR = sqlUnsigned(row[6]);
 ret->colorG = sqlUnsigned(row[7]);
 ret->colorB = sqlUnsigned(row[8]);
 ret->altColorR = sqlUnsigned(row[9]);
 ret->altColorG = sqlUnsigned(row[10]);
 ret->altColorB = sqlUnsigned(row[11]);
 ret->useScore = sqlUnsigned(row[12]);
 ret->private = sqlUnsigned(row[13]);
 sqlStringDynamicArray(row[15], &ret->restrictList, &sizeOne);
 assert(sizeOne == ret->restrictCount);
 ret->url = cloneString(row[16]);
 ret->html = cloneString(row[17]);
 ret->grp = cloneString(row[18]);
 ret->canPack = sqlUnsigned(row[19]);
 ret->settings = cloneString(row[20]);
 return ret;
 }
 
 struct trackDb *trackDbLoadAll(char *fileName)
 /* Load all trackDb from a whitespace-separated file.
  * Dispose of this with trackDbFreeList(). */
 {
 struct trackDb *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[21];
 
 while (lineFileRow(lf, row))
     {
     el = trackDbLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct trackDb *trackDbLoadWhere(struct sqlConnection *conn, char *table,
 	char *where)
 /* Load all trackDb from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with trackDbFreeList(). */
 {
 struct trackDb *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 sqlDyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = trackDbLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }
 
 struct trackDb *trackDbLoadAllByChar(char *fileName, char chopper)
 /* Load all trackDb from a chopper separated file.
  * Dispose of this with trackDbFreeList(). */
 {
 struct trackDb *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[21];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = trackDbLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct trackDb *trackDbCommaIn(char **pS, struct trackDb *ret)
 /* Create a trackDb out of a comma separated string.
  * This will fill in ret if non-null, otherwise will
  * return a new trackDb */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->track = sqlStringComma(&s);
 ret->shortLabel = sqlStringComma(&s);
 ret->type = sqlStringComma(&s);
 ret->longLabel = sqlStringComma(&s);
 ret->visibility = sqlUnsignedComma(&s);
 ret->priority = sqlFloatComma(&s);
 ret->colorR = sqlUnsignedComma(&s);
 ret->colorG = sqlUnsignedComma(&s);
 ret->colorB = sqlUnsignedComma(&s);
 ret->altColorR = sqlUnsignedComma(&s);
 ret->altColorG = sqlUnsignedComma(&s);
 ret->altColorB = sqlUnsignedComma(&s);
 ret->useScore = sqlUnsignedComma(&s);
 ret->private = sqlUnsignedComma(&s);
 ret->restrictCount = sqlSignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->restrictList, ret->restrictCount);
 for (i=0; i<ret->restrictCount; ++i)
     {
     ret->restrictList[i] = sqlStringComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->url = sqlStringComma(&s);
 ret->html = sqlStringComma(&s);
 ret->grp = sqlStringComma(&s);
 ret->canPack = sqlUnsignedComma(&s);
 ret->settings = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void trackDbFree(struct trackDb **pEl)
 /* Free a single dynamically allocated trackDb such as created
  * with trackDbLoad(). */
 {
 return;
 // #ifdef NOT
 struct trackDb *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->track);
 freeMem(el->shortLabel);
 freeMem(el->type);
 freeMem(el->longLabel);
 /* All strings in restrictList are allocated at once, so only need to free first. */
 if (el->restrictList != NULL)
     freeMem(el->restrictList[0]);
 freeMem(el->restrictList);
 freeMem(el->url);
 freeMem(el->html);
 freeMem(el->grp);
 freeMem(el->settings);
 hashFree(&el->settingsHash);
 hashFree(&el->overrides);
 tdbExtrasFree(&el->tdbExtras);
 freez(pEl);
 // #endif /* NOT */
 }
 
 void trackDbFreeList(struct trackDb **pList)
 /* Free a list of dynamically allocated trackDb's */
 {
 return;
 // #ifdef NOT
 struct trackDb *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     trackDbFree(&el);
     }
 *pList = NULL;
 // #endif /* NOT */
 }
 
 void trackDbOutput(struct trackDb *el, FILE *f, char sep, char lastSep)
 /* Print out trackDb.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->track);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->shortLabel);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->longLabel);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->visibility);
 fputc(sep,f);
 fprintf(f, "%f", el->priority);
 fputc(sep,f);
 fprintf(f, "%u", el->colorR);
 fputc(sep,f);
 fprintf(f, "%u", el->colorG);
 fputc(sep,f);
 fprintf(f, "%u", el->colorB);
 fputc(sep,f);
 fprintf(f, "%u", el->altColorR);
 fputc(sep,f);
 fprintf(f, "%u", el->altColorG);
 fputc(sep,f);
 fprintf(f, "%u", el->altColorB);
 fputc(sep,f);
 fprintf(f, "%u", el->useScore);
 fputc(sep,f);
 fprintf(f, "%u", el->private);
 fputc(sep,f);
 fprintf(f, "%d", el->restrictCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->restrictCount; ++i)
     {
     if (sep == ',') fputc('"',f);
     fprintf(f, "%s", el->restrictList[i]);
     if (sep == ',') fputc('"',f);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->url);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->html);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->grp);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->canPack);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->settings);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */