e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/trackVersion.c src/hg/lib/trackVersion.c
index f0d072f..dcb73cf 100644
--- src/hg/lib/trackVersion.c
+++ src/hg/lib/trackVersion.c
@@ -1,235 +1,238 @@
 /* trackVersion.c was originally generated by the autoSql program, which also 
  * generated trackVersion.h and trackVersion.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "hdb.h"
 #include "trackVersion.h"
 #include "trackHub.h"
 
 
 void trackVersionStaticLoad(char **row, struct trackVersion *ret)
 /* Load a row from trackVersion table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->ix = sqlSigned(row[0]);
 ret->db = row[1];
 ret->name = row[2];
 ret->who = row[3];
 ret->version = row[4];
 ret->updateTime = row[5];
 ret->comment = row[6];
 ret->source = row[7];
 ret->dateReference = row[8];
 }
 
 struct trackVersion *trackVersionLoad(char **row)
 /* Load a trackVersion from row fetched with select * from trackVersion
  * from database.  Dispose of this with trackVersionFree(). */
 {
 struct trackVersion *ret;
 
 AllocVar(ret);
 ret->ix = sqlSigned(row[0]);
 ret->db = cloneString(row[1]);
 ret->name = cloneString(row[2]);
 ret->who = cloneString(row[3]);
 ret->version = cloneString(row[4]);
 ret->updateTime = cloneString(row[5]);
 ret->comment = cloneString(row[6]);
 ret->source = cloneString(row[7]);
 ret->dateReference = cloneString(row[8]);
 return ret;
 }
 
 struct trackVersion *trackVersionLoadAll(char *fileName) 
 /* Load all trackVersion from a whitespace-separated file.
  * Dispose of this with trackVersionFreeList(). */
 {
 struct trackVersion *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[9];
 
 while (lineFileRow(lf, row))
     {
     el = trackVersionLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct trackVersion *trackVersionLoadAllByChar(char *fileName, char chopper) 
 /* Load all trackVersion from a chopper separated file.
  * Dispose of this with trackVersionFreeList(). */
 {
 struct trackVersion *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[9];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = trackVersionLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct trackVersion *trackVersionLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all trackVersion from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with trackVersionFreeList(). */
 {
 struct trackVersion *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = trackVersionLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void trackVersionSaveToDb(struct sqlConnection *conn, struct trackVersion *el, char *tableName, int updateSize)
 /* Save trackVersion as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( %d,'%s','%s','%s','%s','%s','%s','%s','%s')", 
 	tableName,  el->ix,  el->db,  el->name,  el->who,  el->version,  el->updateTime,  el->comment,  el->source,  el->dateReference);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 
 struct trackVersion *trackVersionCommaIn(char **pS, struct trackVersion *ret)
 /* Create a trackVersion out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new trackVersion */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->ix = sqlSignedComma(&s);
 ret->db = sqlStringComma(&s);
 ret->name = sqlStringComma(&s);
 ret->who = sqlStringComma(&s);
 ret->version = sqlStringComma(&s);
 ret->updateTime = sqlStringComma(&s);
 ret->comment = sqlStringComma(&s);
 ret->source = sqlStringComma(&s);
 ret->dateReference = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void trackVersionFree(struct trackVersion **pEl)
 /* Free a single dynamically allocated trackVersion such as created
  * with trackVersionLoad(). */
 {
 struct trackVersion *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->db);
 freeMem(el->name);
 freeMem(el->who);
 freeMem(el->version);
 freeMem(el->updateTime);
 freeMem(el->comment);
 freeMem(el->source);
 freeMem(el->dateReference);
 freez(pEl);
 }
 
 void trackVersionFreeList(struct trackVersion **pList)
 /* Free a list of dynamically allocated trackVersion's */
 {
 struct trackVersion *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     trackVersionFree(&el);
     }
 *pList = NULL;
 }
 
 void trackVersionOutput(struct trackVersion *el, FILE *f, char sep, char lastSep) 
 /* Print out trackVersion.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%d", el->ix);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->who);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->version);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->updateTime);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->comment);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->source);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dateReference);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct trackVersion *getTrackVersion(char *database, char *track)
 // Get most recent trackVersion for given track in given database
 {
 boolean trackVersionExists = !trackHubDatabase(database) && hTableExists("hgFixed", "trackVersion");
 struct trackVersion *trackVersion = NULL;
 if (trackVersionExists)
     {
     char query[256];
     struct sqlConnection *conn = hAllocConn(database);
 
     sqlSafef(query, sizeof(query), "select * from hgFixed.trackVersion where db = '%s' AND name = '%s' order by ix DESC limit 1", database, track);
     struct sqlResult *sr = sqlGetResult(conn, query);
     char **row;
     if ((row = sqlNextRow(sr)) != NULL)
         trackVersion = trackVersionLoad(row);
     sqlFreeResult(&sr);
     hFreeConn(&conn);
     }
 return trackVersion;
 }