e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/transMapGene.c src/hg/lib/transMapGene.c
index c7cc21f..c348b88 100644
--- src/hg/lib/transMapGene.c
+++ src/hg/lib/transMapGene.c
@@ -1,148 +1,151 @@
 /* transMapGene.c was originally generated by the autoSql program, which also 
  * generated transMapGene.h and transMapGene.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "transMapGene.h"
 
 
 void transMapGeneStaticLoad(char **row, struct transMapGene *ret)
 /* Load a row from transMapGene table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = row[0];
 ret->cds = row[1];
 safecpy(ret->db, sizeof(ret->db), row[2]);
 ret->geneName = row[3];
 }
 
 struct transMapGene *transMapGeneLoad(char **row)
 /* Load a transMapGene from row fetched with select * from transMapGene
  * from database.  Dispose of this with transMapGeneFree(). */
 {
 struct transMapGene *ret;
 
 AllocVar(ret);
 ret->id = cloneString(row[0]);
 ret->cds = cloneString(row[1]);
 safecpy(ret->db, sizeof(ret->db), row[2]);
 ret->geneName = cloneString(row[3]);
 return ret;
 }
 
 struct transMapGene *transMapGeneLoadAll(char *fileName) 
 /* Load all transMapGene from a whitespace-separated file.
  * Dispose of this with transMapGeneFreeList(). */
 {
 struct transMapGene *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[4];
 
 while (lineFileRow(lf, row))
     {
     el = transMapGeneLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapGene *transMapGeneLoadAllByChar(char *fileName, char chopper) 
 /* Load all transMapGene from a chopper separated file.
  * Dispose of this with transMapGeneFreeList(). */
 {
 struct transMapGene *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[4];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = transMapGeneLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapGene *transMapGeneCommaIn(char **pS, struct transMapGene *ret)
 /* Create a transMapGene out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new transMapGene */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->id = sqlStringComma(&s);
 ret->cds = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->db, sizeof(ret->db));
 ret->geneName = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void transMapGeneFree(struct transMapGene **pEl)
 /* Free a single dynamically allocated transMapGene such as created
  * with transMapGeneLoad(). */
 {
 struct transMapGene *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->cds);
 freeMem(el->geneName);
 freez(pEl);
 }
 
 void transMapGeneFreeList(struct transMapGene **pList)
 /* Free a list of dynamically allocated transMapGene's */
 {
 struct transMapGene *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     transMapGeneFree(&el);
     }
 *pList = NULL;
 }
 
 void transMapGeneOutput(struct transMapGene *el, FILE *f, char sep, char lastSep) 
 /* Print out transMapGene.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->cds);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneName);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct transMapGene *transMapGeneQuery(struct sqlConnection *geneConn,
                                        char *table, char *srcDb, char *srcId)
 /* load a single transMapSrc object for an srcDb and srcId from a table,
  * or return NULL if not found */
 {
 return sqlQueryObjs(geneConn, (sqlLoadFunc)transMapGeneLoad,
                     sqlQuerySingle,
                     "SELECT * FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
                     table, srcDb, srcId);
 }