e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/transMapInfo.c src/hg/lib/transMapInfo.c
index 331aa7f..5f90214 100644
--- src/hg/lib/transMapInfo.c
+++ src/hg/lib/transMapInfo.c
@@ -1,159 +1,162 @@
 /* transMapInfo.c was originally generated by the autoSql program, which also 
  * generated transMapInfo.h and transMapInfo.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "transMapInfo.h"
 
 
 /* definitions for chainSubset column */
 static char *values_chainSubset[] = {"unknown", "all", "syn", "rbest", NULL};
 static struct hash *valhash_chainSubset = NULL;
 
 void transMapInfoStaticLoad(char **row, struct transMapInfo *ret)
 /* Load a row from transMapInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->mappedId = row[0];
 safecpy(ret->srcDb, sizeof(ret->srcDb), row[1]);
 ret->srcId = row[2];
 ret->mappingId = row[3];
 ret->chainSubset = sqlEnumParse(row[4], values_chainSubset, &valhash_chainSubset);
 }
 
 struct transMapInfo *transMapInfoLoad(char **row)
 /* Load a transMapInfo from row fetched with select * from transMapInfo
  * from database.  Dispose of this with transMapInfoFree(). */
 {
 struct transMapInfo *ret;
 
 AllocVar(ret);
 ret->mappedId = cloneString(row[0]);
 safecpy(ret->srcDb, sizeof(ret->srcDb), row[1]);
 ret->srcId = cloneString(row[2]);
 ret->mappingId = cloneString(row[3]);
 ret->chainSubset = sqlEnumParse(row[4], values_chainSubset, &valhash_chainSubset);
 return ret;
 }
 
 struct transMapInfo *transMapInfoLoadAll(char *fileName) 
 /* Load all transMapInfo from a whitespace-separated file.
  * Dispose of this with transMapInfoFreeList(). */
 {
 struct transMapInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = transMapInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapInfo *transMapInfoLoadAllByChar(char *fileName, char chopper) 
 /* Load all transMapInfo from a chopper separated file.
  * Dispose of this with transMapInfoFreeList(). */
 {
 struct transMapInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = transMapInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapInfo *transMapInfoCommaIn(char **pS, struct transMapInfo *ret)
 /* Create a transMapInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new transMapInfo */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->mappedId = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->srcDb, sizeof(ret->srcDb));
 ret->srcId = sqlStringComma(&s);
 ret->mappingId = sqlStringComma(&s);
 ret->chainSubset = sqlEnumComma(&s, values_chainSubset, &valhash_chainSubset);
 *pS = s;
 return ret;
 }
 
 void transMapInfoFree(struct transMapInfo **pEl)
 /* Free a single dynamically allocated transMapInfo such as created
  * with transMapInfoLoad(). */
 {
 struct transMapInfo *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->mappedId);
 freeMem(el->srcId);
 freeMem(el->mappingId);
 freez(pEl);
 }
 
 void transMapInfoFreeList(struct transMapInfo **pList)
 /* Free a list of dynamically allocated transMapInfo's */
 {
 struct transMapInfo *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     transMapInfoFree(&el);
     }
 *pList = NULL;
 }
 
 void transMapInfoOutput(struct transMapInfo *el, FILE *f, char sep, char lastSep) 
 /* Print out transMapInfo.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mappedId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcDb);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->mappingId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 sqlEnumPrint(f, el->chainSubset, values_chainSubset);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct transMapInfo *transMapInfoQuery(struct sqlConnection *conn,
                                        char *table, char *mappedId)
 /* load a single transMapInfo object for an mapped id from a table,
  * or error if not found */
 {
 return sqlQueryObjs(conn, (sqlLoadFunc)transMapInfoLoad,
                     sqlQueryMust|sqlQuerySingle,
                     "SELECT * FROM %s WHERE mappedId = \"%s\"",
                     table, mappedId);
 }