e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/lib/transMapSrc.c src/hg/lib/transMapSrc.c index a08eeef..258654a 100644 --- src/hg/lib/transMapSrc.c +++ src/hg/lib/transMapSrc.c @@ -1,168 +1,171 @@ /* transMapSrc.c was originally generated by the autoSql program, which also * generated transMapSrc.h and transMapSrc.sql. This module links the database and * the RAM representation of objects. */ +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "transMapSrc.h" void transMapSrcStaticLoad(char **row, struct transMapSrc *ret) /* Load a row from transMapSrc table into ret. The contents of ret will * be replaced at the next call to this function. */ { safecpy(ret->db, sizeof(ret->db), row[0]); ret->id = row[1]; ret->chrom = row[2]; ret->chromStart = sqlUnsigned(row[3]); ret->chromEnd = sqlUnsigned(row[4]); ret->strand = row[5][0]; ret->ident = sqlFloat(row[6]); ret->aligned = sqlFloat(row[7]); } struct transMapSrc *transMapSrcLoad(char **row) /* Load a transMapSrc from row fetched with select * from transMapSrc * from database. Dispose of this with transMapSrcFree(). */ { struct transMapSrc *ret; AllocVar(ret); safecpy(ret->db, sizeof(ret->db), row[0]); ret->id = cloneString(row[1]); ret->chrom = cloneString(row[2]); ret->chromStart = sqlUnsigned(row[3]); ret->chromEnd = sqlUnsigned(row[4]); ret->strand = row[5][0]; ret->ident = sqlFloat(row[6]); ret->aligned = sqlFloat(row[7]); return ret; } struct transMapSrc *transMapSrcLoadAll(char *fileName) /* Load all transMapSrc from a whitespace-separated file. * Dispose of this with transMapSrcFreeList(). */ { struct transMapSrc *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[8]; while (lineFileRow(lf, row)) { el = transMapSrcLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct transMapSrc *transMapSrcLoadAllByChar(char *fileName, char chopper) /* Load all transMapSrc from a chopper separated file. * Dispose of this with transMapSrcFreeList(). */ { struct transMapSrc *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[8]; while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) { el = transMapSrcLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct transMapSrc *transMapSrcCommaIn(char **pS, struct transMapSrc *ret) /* Create a transMapSrc out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new transMapSrc */ { char *s = *pS; if (ret == NULL) AllocVar(ret); sqlFixedStringComma(&s, ret->db, sizeof(ret->db)); ret->id = sqlStringComma(&s); ret->chrom = sqlStringComma(&s); ret->chromStart = sqlUnsignedComma(&s); ret->chromEnd = sqlUnsignedComma(&s); sqlFixedStringComma(&s, &(ret->strand), sizeof(ret->strand)); ret->ident = sqlFloatComma(&s); ret->aligned = sqlFloatComma(&s); *pS = s; return ret; } void transMapSrcFree(struct transMapSrc **pEl) /* Free a single dynamically allocated transMapSrc such as created * with transMapSrcLoad(). */ { struct transMapSrc *el; if ((el = *pEl) == NULL) return; freeMem(el->id); freeMem(el->chrom); freez(pEl); } void transMapSrcFreeList(struct transMapSrc **pList) /* Free a list of dynamically allocated transMapSrc's */ { struct transMapSrc *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; transMapSrcFree(&el); } *pList = NULL; } void transMapSrcOutput(struct transMapSrc *el, FILE *f, char sep, char lastSep) /* Print out transMapSrc. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->db); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->id); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->chrom); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->chromStart); fputc(sep,f); fprintf(f, "%u", el->chromEnd); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%c", el->strand); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%g", el->ident); fputc(sep,f); fprintf(f, "%g", el->aligned); fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */ struct transMapSrc *transMapSrcQuery(struct sqlConnection *srcConn, char *table, char *srcDb, char *srcId) /* load a single transMapSrc object for an srcDb and srcId from a table, * or error if not found */ { return sqlQueryObjs(srcConn, (sqlLoadFunc)transMapSrcLoad, sqlQueryMust|sqlQuerySingle, "SELECT * FROM %s WHERE (db=\"%s\") and (id = \"%s\")", table, srcDb, srcId); }