e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/transRegCodeProbe.c src/hg/lib/transRegCodeProbe.c
index 798f75b..3acb1f0 100644
--- src/hg/lib/transRegCodeProbe.c
+++ src/hg/lib/transRegCodeProbe.c
@@ -1,187 +1,190 @@
 /* transRegCodeProbe.c was originally generated by the autoSql program, which also 
  * generated transRegCodeProbe.h and transRegCodeProbe.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "transRegCodeProbe.h"
 
 
 struct transRegCodeProbe *transRegCodeProbeLoad(char **row)
 /* Load a transRegCodeProbe from row fetched with select * from transRegCodeProbe
  * from database.  Dispose of this with transRegCodeProbeFree(). */
 {
 struct transRegCodeProbe *ret;
 
 AllocVar(ret);
 ret->tfCount = sqlUnsigned(row[4]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 {
 int sizeOne;
 sqlStringDynamicArray(row[5], &ret->tfList, &sizeOne);
 assert(sizeOne == ret->tfCount);
 }
 {
 int sizeOne;
 sqlFloatDynamicArray(row[6], &ret->bindVals, &sizeOne);
 assert(sizeOne == ret->tfCount);
 }
 return ret;
 }
 
 struct transRegCodeProbe *transRegCodeProbeLoadAll(char *fileName) 
 /* Load all transRegCodeProbe from a whitespace-separated file.
  * Dispose of this with transRegCodeProbeFreeList(). */
 {
 struct transRegCodeProbe *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = transRegCodeProbeLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transRegCodeProbe *transRegCodeProbeLoadAllByChar(char *fileName, char chopper) 
 /* Load all transRegCodeProbe from a chopper separated file.
  * Dispose of this with transRegCodeProbeFreeList(). */
 {
 struct transRegCodeProbe *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = transRegCodeProbeLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transRegCodeProbe *transRegCodeProbeCommaIn(char **pS, struct transRegCodeProbe *ret)
 /* Create a transRegCodeProbe out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new transRegCodeProbe */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->tfCount = sqlUnsignedComma(&s);
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->tfList, ret->tfCount);
 for (i=0; i<ret->tfCount; ++i)
     {
     ret->tfList[i] = sqlStringComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->bindVals, ret->tfCount);
 for (i=0; i<ret->tfCount; ++i)
     {
     ret->bindVals[i] = sqlFloatComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 *pS = s;
 return ret;
 }
 
 void transRegCodeProbeFree(struct transRegCodeProbe **pEl)
 /* Free a single dynamically allocated transRegCodeProbe such as created
  * with transRegCodeProbeLoad(). */
 {
 struct transRegCodeProbe *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 /* All strings in tfList are allocated at once, so only need to free first. */
 if (el->tfList != NULL)
     freeMem(el->tfList[0]);
 freeMem(el->tfList);
 freeMem(el->bindVals);
 freez(pEl);
 }
 
 void transRegCodeProbeFreeList(struct transRegCodeProbe **pList)
 /* Free a list of dynamically allocated transRegCodeProbe's */
 {
 struct transRegCodeProbe *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     transRegCodeProbeFree(&el);
     }
 *pList = NULL;
 }
 
 void transRegCodeProbeOutput(struct transRegCodeProbe *el, FILE *f, char sep, char lastSep) 
 /* Print out transRegCodeProbe.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->tfCount);
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->tfCount; ++i)
     {
     if (sep == ',') fputc('"',f);
     fprintf(f, "%s", el->tfList[i]);
     if (sep == ',') fputc('"',f);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->tfCount; ++i)
     {
     fprintf(f, "%g", el->bindVals[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */